PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca34079.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 371aa    MW: 42729.7 Da    PI: 6.7874
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca34079.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001579101323
                 ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                 C+   Cgk+F +   L++H + H
  Dca34079.1  79 CSyeGCGKTFIDAGALRKHSNIH 101
                 77779**************9988 PP
2zf-C2H213.30.00024106130123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C+   Cgk F ++s LkrH   H
  Dca34079.1 106 HTCHyeGCGKKFLDSSKLKRHFLIH 130
                 79*******************8877 PP
3zf-C2H221.46.5e-07136160123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 + Cp   Cgk Fs   nL++H++tH
  Dca34079.1 136 FICPieGCGKAFSLDFNLRSHMKTH 160
                 78**********************9 PP
4zf-C2H212.10.00058166191123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 + Cp  dC k+F + + Lk+Hi++ H
  Dca34079.1 166 HICPypDCMKRFAHEYKLKNHISSqH 191
                 679999****************9988 PP
5zf-C2H213.90.00016228253123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 y Cp   C+k + + + L+ H+r+ H
  Dca34079.1 228 YACPyeGCSKAYIHEYKLNLHLRReH 253
                 89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-1272103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9777106IPR007087Zinc finger, C2H2
SMARTSM003550.002877101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576674.5E-880130No hitNo description
Gene3DG3DSA:3.30.160.602.4E-12104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016106130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.277106135IPR007087Zinc finger, C2H2
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576672.66E-14117169No hitNo description
Gene3DG3DSA:3.30.160.604.2E-20127162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.4E-4136160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.591136165IPR007087Zinc finger, C2H2
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-6163187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621166196IPR007087Zinc finger, C2H2
SMARTSM003550.019166191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-8222251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.39E-5222251No hitNo description
SMARTSM003550.0083228253IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014228258IPR007087Zinc finger, C2H2
PROSITE patternPS000280230253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDPQMSYSLF DRRPIVKSKT PAVRWVKEWV PQDAVATGGK CYLKKWITED ALRLLKEKSK  60
ETVVREPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSNI HGERQHTCHY EGCGKKFLDS  120
SKLKRHFLIH TGERDFICPI EGCGKAFSLD FNLRSHMKTH SQENYHICPY PDCMKRFAHE  180
YKLKNHISSQ HEKNSAEQIK YTPPVEKPVK TPRVTPATYA SASSDRPYAC PYEGCSKAYI  240
HEYKLNLHLR REHPGHYAED SAKTPQPHNV DNELDDASDH DAYGSIRTNF KNLKQNKRKS  300
EFKLPPAKVI QRKGSTPAAI NVVKKPWPVK EDIYQDEDSE ETEEDRGDNA EDGWRFAGNN  360
EEDDEETEDE D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C9e-34791878119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670022.10.0PREDICTED: uncharacterized zinc finger protein At4g06634 isoform X2
SwissprotQ2V3L31e-151YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLG5DWF60.0G5DWF6_SILLA; Zinc finger protein (Fragment)
STRINGXP_010670021.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-150C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]