PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca34227.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 350aa    MW: 38347.4 Da    PI: 9.3697
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca34227.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.5e-07254303147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv av+qlG+g+W+ +  +     k+Rt  ++k++w ++
       Dca34227.1 254 RRPFSVSEVEALVLAVEQLGTGRWRDVKVRAFddaKHRTYVDLKDKWKTL 303
                      678999********************9999999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.09E-657135IPR029071Ubiquitin-related domain
CDDcd017690.0045465133No hitNo description
PROSITE profilePS5129412.005249308IPR017930Myb domain
SMARTSM007172.4E-6253306IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-9254304IPR009057Homeodomain-like
SuperFamilySSF466899.87E-15255336IPR009057Homeodomain-like
CDDcd116601.07E-16255305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MRSQRIYPFK KRRCYQYNSL SSYHGDVGVK GIYNNCDAAR VNGSSARVSG QSTTLSSRES  60
DVKLRIKSLR VPELFIEMPE TATIGSLKRT VMQAVSAMLG GGLHVGVLHH GKKIRDDNNT  120
LLQSGICNTN KVESLGFCLE PNLSQAGAPV SSEENSLVLS TDVTPPVSGY AVTNEIHQGT  180
SHLSADHLPA VVGNFIESDH DSAPSPAELL SAEKGTVDSL ALVAHHEGTP QALAVVRSPH  240
KSKQRSDMVQ RRIRRPFSVS EVEALVLAVE QLGTGRWRDV KVRAFDDAKH RTYVDLKDKW  300
KTLVHTASIA PQQRRGEPVP QELLDRVLAA HGFWTQHQAK SPQTVTCLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-542403404103Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685737.11e-155PREDICTED: telomere repeat-binding protein 2
SwissprotQ6R0E31e-102TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A0K9S2D71e-147A0A0K9S2D7_SPIOL; Uncharacterized protein
STRINGXP_010685737.11e-155(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-84TRF-like 2