PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca34429.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 593aa    MW: 64693.2 Da    PI: 6.5996
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca34429.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.1e-31310368259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Dca34429.1 310 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKSILITTYEGNHNHP 368
                 7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33294370IPR003657WRKY domain
SuperFamilySSF1182905.89E-28302370IPR003657WRKY domain
PROSITE profilePS5081129.723304370IPR003657WRKY domain
SMARTSM007742.4E-37309369IPR003657WRKY domain
PfamPF031068.2E-27311368IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MDFPMSLLNN RGDGGGGGGS SGGGGDKVVV GEVDFFSHNN KNHHNDNHED HVKEENCSRD  60
IHQSCCALDP RTTNLDVNIG LHLLTTNTGS DHSTIDDSAS SDAEEKRAKN ELAQLQAELQ  120
RMNAENQKLK NMLTQVSQNY NALQMHLVSL LQQQQQQRQQ HDENIQQQQQ QQLLRQQQHE  180
ANMQGKAEQM VPRQFLDLGP SVNNETDELT SQTLSDEDRT LDRSIGSPQN TTEVASRNNN  240
SNKDVVMYDH GKRVREESLE KSENQGWVPN KVPKLNVPRV NSPIEQATAE ATMRKARVSV  300
RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG CPVRKQVQRC AEDKSILITT  360
YEGNHNHPLP PAAMAMASTT SAAASMLLSG SMPSGDGLMN PNFLARTILP YSTSMATISA  420
SAPFPTVTLD LTHSPNPLQS QRPPIVPQPI SPFQLPFQSS NGQLAPNFLA SMPQILSQAF  480
LNNNGGNNNN NNNNHNQSKF SGLHTSSSQA MDPSQLQNSN QNPAFADTLS AATTAITSDP  540
NFTAALAAAI SSIIGGANNN NHNIANNALG NNNNNSNNDD KNNVKSNDGN MKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-23296372176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686806.10.0PREDICTED: probable WRKY transcription factor 31 isoform X1
SwissprotQ9XEC31e-150WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A0K9S1P80.0A0A0K9S1P8_SPIOL; Uncharacterized protein
STRINGXP_010686806.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-113WRKY family protein