PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca34540.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 400aa    MW: 45011.1 Da    PI: 10.0969
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca34540.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-07126166954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  r+RR+ri +++  L++l+P       +K++ a++L +A +Y++ L
  Dca34540.1 126 ARQRRERISERLRVLQKLVPGG-----TKMDTATMLDEAANYLRFL 166
                 69******************87.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.932117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-13123175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-10123171No hitNo description
SMARTSM003533.1E-13123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11125175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-5126166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MHTIQENHSK SNSTTHTTTT SGPKGNYKRQ RQRYSPNNNN LNARSKIQIS SNSSLNISFQ  60
QVGSSSGTAL LGANNAEPDA EAIQQMKEMI YRAAAFRPVN FGTEELEKPN KRKNVRISSD  120
PQTVAARQRR ERISERLRVL QKLVPGGTKM DTATMLDEAA NYLRFLRNQV KDLENLGRSR  180
KGSSSRSSMR SDEETESSDS QETQQQNEEQ EADDTPPTDA TGKLILDPKS YCRPKATKGR  240
LKKKISGRPT SVAKKISGRL HFARKKDSDK YEAYMKRVEE EPGTKPDQIW LEVNEGFKKG  300
AVYGVGNAAE YIYEKRNRRL STVSDSMYTP GIVRKLEDRV ANQDERLSAQ DEELRLMREQ  360
LQRMQTYFEQ CNPGIGPQFP DPRDPHGGGP SSGASVGFQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732KRQRQR
2126131RQRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.19e-44bHLH family protein