PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca34636.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 344aa MW: 39484.9 Da PI: 5.2416

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca34636.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	55.3	2.2e-17	9	149	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk......kvka...eekewyfFskrdkk.yatgkrknr.atksgyWkatgkd 89 +Gf F+Pt ++lv ++L +++g++l+ + ++++y +P+++ + +v+ +++ +yfF++ ++ ++++kr nr + ++g+W a+ + Dca34636.1 9 VGFVFEPTIQQLVGYFLMTRLNGQQLPSCYPqFFDFNVYCDHPSNIFSsinnvrEVHDedeDDDGYYFFTQLTRRnNPKSKRFNRvVKDHGTWLAKSEI 107 7**********************77755459999******6435666622223324447899998765515689966669***** PP NAM 90 kevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 +v+++ g+l+g k f k+++ ++ +W m ey+l Dca34636.1 108 IQVYDSVGNLIGFEKYYKFVpinKKKKDPLNEDEWQMYEYTL 149 ***************98765555556799*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-19	5	165	IPR003441	NAC domain
PROSITE profile	PS51005	24.044	7	165	IPR003441	NAC domain
Pfam	PF02365	1.6E-10	9	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MIMEVYRQVG FVFEPTIQQL VGYFLMTRLN GQQLPSCYPQ FFDFNVYCDH PSNIFSSINN 60 VREVHDEDED DDGYYFFTQL TRRNNPKSKR FNRVVKDHGT WLAKSEIIQV YDSVGNLIGF 120 EKYYKFVPIN KKKKDPLNED EWQMYEYTLN DVKCQDFVLC HITRKLSPAI KQRRLLAKKS 180 RLISPIIVSQ NQNNSQENLS KTTCVEDSIN LDPFDLTFKS LLTECGGVNI NNNNDNNNNN 240 NNNLSNEGQI DIDFYLEQET MPEGDQGSIY EQSVSNNGNG VQGGFQAVFG GSYNEYNSNN 300 VGQLIPRDDY GHVHVHGGVQ GARDRFKSLE KQGLIVPTAN STRN

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MIMEVYRQVG FVFEPTIQQL VGYFLMTRLN GQQLPSCYPQ FFDFNVYCDH PSNIFSSINN  60
VREVHDEDED DDGYYFFTQL TRRNNPKSKR FNRVVKDHGT WLAKSEIIQV YDSVGNLIGF  120
EKYYKFVPIN KKKKDPLNED EWQMYEYTLN DVKCQDFVLC HITRKLSPAI KQRRLLAKKS  180
RLISPIIVSQ NQNNSQENLS KTTCVEDSIN LDPFDLTFKS LLTECGGVNI NNNNDNNNNN  240
NNNLSNEGQI DIDFYLEQET MPEGDQGSIY EQSVSNNGNG VQGGFQAVFG GSYNEYNSNN  300
VGQLIPRDDY GHVHVHGGVQ GARDRFKSLE KQGLIVPTAN STRN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71930.1	5e-08	vascular related NAC-domain protein 7