PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca3474.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NF-YB

Protein Properties

Length: 129aa MW: 12625.6 Da PI: 7.0894

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca3474.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	57.5	3.3e-18	23	58	2	37
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqe 37 +eqdrflPianvsrimkk+lPanakiskdaketvqe Dca3474.1 23 KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQE 58 79*********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.56E-11	9	61	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.3E-16	20	58	IPR009072	Histone-fold
Pfam	PF00808	8.8E-10	28	61	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MADSDNDSGG RSHGGEHHLS SLKEQDRFLP IANVSRIMKK ALPANAKISK DAKETVQEEL 60 EGERTGNPIQ GNGGGGGGGS SGGVSSGGNG GGYGNGGGGS GGVNNGVMMM GHVIGQSGQG 120 YGGHGYGAK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-26	nuclear factor Y, subunit B3