PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca34782.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 290aa    MW: 32399.5 Da    PI: 6.5991
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca34782.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.8e-11111158254
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 + +h ++Er+RR+++ ++f  L  l+P +     kK++K ++L +A+ ++k+L
  Dca34782.1 111 CHNHIIAERQRRQNLSQRFIALSALIPGL-----KKMDKTSVLGEAIAHMKEL 158
                 789**************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-9110158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-15112172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14113170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-10113161No hitNo description
SMARTSM003534.9E-10115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLLQDFVGDC LIDYPPENIA TLMDDPELHY PLSAGSECNS PTAAKHPKPN DYNNDQSSPS  60
NNSSNYDSNQ HQQRSPAQLV VSPSPEECDN RRTVGEPGKS IKRPRRLPDQ CHNHIIAERQ  120
RRQNLSQRFI ALSALIPGLK KMDKTSVLGE AIAHMKELKE KMKILEDESA RRAVDSVVVV  180
QRSRVAVEND CNSSTTTTDS TETSLTHGEQ LPEVEARFSD RSVLIKIHCQ TKTGILPKIT  240
SQVESLKLQM THTNSMPFNN NTLDITIVSQ MEPGFNLSPQ EVVAKLRSIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13113162857Transcription factor MYC2
5gnj_B2e-13113162857Transcription factor MYC2
5gnj_E2e-13113162857Transcription factor MYC2
5gnj_F2e-13113162857Transcription factor MYC2
5gnj_G2e-13113162857Transcription factor MYC2
5gnj_I2e-13113162857Transcription factor MYC2
5gnj_M2e-13113162857Transcription factor MYC2
5gnj_N2e-13113162857Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106053.11e-76PREDICTED: transcription factor bHLH25-like
STRINGXP_010683071.14e-76(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-31bHLH family protein