PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca34823.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

G2-like

Protein Properties

Length: 206aa MW: 22393.1 Da PI: 9.6563

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca34823.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.3	1.9e-29	36	85	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH++Fv+a+++LGG++kAtPk +l+lm+v gLt++hvkSHLQ Dca34823.1 36 PRLRWTPDLHRCFVHAIDRLGGQHKATPKLVLQLMDVRGLTISHVKSHLQ 85 8************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-27	32	85	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.383	32	92	IPR017930	Myb domain
SuperFamily	SSF46689	4.66E-13	34	85	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-21	36	85	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-6	37	85	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MERSGTSNKS CGNSHSGGGG GGGSGGVRQY VRSKVPRLRW TPDLHRCFVH AIDRLGGQHK 60 ATPKLVLQLM DVRGLTISHV KSHLQGAMAN VQPQKQAHHR YNSESHDTFG RRHKTVSIEV 120 EKELAEKTIM GDKRRSNESE GLSLTLSLQP TLSPLLVGKG SNVSSTNVSE ISEQAISSNS 180 STSTAWDEHV HHPLNLDLSI SLCSME

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-17	37	85	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-17	37	85	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-17	37	85	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-17	37	85	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-17	37	85	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-17	37	85	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-17	37	85	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-17	37	85	4	52	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016574578.1	1e-36	PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
Refseq	XP_016574579.1	1e-36	PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
TrEMBL	A0A1U8H0J8	3e-35	A0A1U8H0J8_CAPAN; Uncharacterized protein
TrEMBL	A0A1U8H2E3	3e-35	A0A1U8H2E3_CAPAN; putative Myb family transcription factor At1g14600 isoform X2
TrEMBL	A0A2G2ZH63	3e-35	A0A2G2ZH63_CAPAN; putative Myb family transcription factor At1g14600 isoform X1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	7e-33	G2-like family protein