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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Dca34946.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 291aa MW: 34045.8 Da PI: 9.8806 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 49.2 | 1.7e-15 | 43 | 136 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
kfY+ YA +GF+ r+ ++++ r+g+ + vC++eg+ e++k++ + r+++ +r+gC+a+++ + +g+ v+ +++ HnHel+
Dca34946.1 43 KFYKIYALACGFTSRRWSTSHW-RDGTLQFKLVVCNREGFWESKKQRkakeegCVGDGRKNKLHRIGCRARIRFLVK-NGVISVDVFNEFHNHELV 136
6**************9998887.888899***********99998884444444444559**************998.****************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 3.7E-12 | 43 | 136 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 291 aa Download sequence Send to blast |
MKRNAGVNGV EEQFGPHDFC TRLEKEFTPF VGQVFDDLET GIKFYKIYAL ACGFTSRRWS 60 TSHWRDGTLQ FKLVVCNREG FWESKKQRKA KEEGCVGDGR KNKLHRIGCR ARIRFLVKNG 120 VISVDVFNEF HNHELVSPEH RQFQKMARHL TKYHKRLILA NSRLNIGATK TFRMYKELVD 180 GFENVGATLN DFKNFKRDVN CFIHDRDGQL FVDHLLNLKE TRPGFYFDYD VDSKGRLRRV 240 IWADDYARKS YAIFGDGLAF DPTYSTNKYS MVFTPLTGVD NHRNLLHLVV H |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 3e-26 | FAR1-related sequence 5 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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