PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca35085.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

WRKY

Protein Properties

Length: 622aa MW: 67689 Da PI: 5.5346

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca35085.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	9.1e-31	340	398	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Dca35085.1 340 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 398 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-33	324	400	IPR003657	WRKY domain
SuperFamily	SSF118290	7.19E-28	332	400	IPR003657	WRKY domain
PROSITE profile	PS50811	29.677	334	400	IPR003657	WRKY domain
SMART	SM00774	3.7E-37	339	399	IPR003657	WRKY domain
Pfam	PF03106	1.0E-26	341	398	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MSHNNNSISF NNNDGRRNDQ VCRGVEFPVN LINNNHHTAG SGDHHDVHDD GVVRNNKVVG 60 EVDFFSGHHH NNNNNDDDDD DHVKEEESSR DPYHTSTAPD PTPHLPTVNT GLHLLTTNTG 120 SDQSTIDDSA SSDVEDKKAK QELAVLQVEL ERMNVENQKL KNMLSQVSQN YNALQMHLVN 180 LMQQQRLDKG ENQQQQQQQQ HEAITQGKVE EQNRSMIPRQ FLDLGPNANN ESNEQTSQTL 240 SDQDRTVLDR SLGSPQDMME IAPRNNNDGN SKDIMMYENG KGIIREESPD DSDTQGWVPN 300 KVPKLNVPRV ASPVEQAAAE ATMRKARVSV RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR 360 AYYRCTMAVG CPVRKQVQRC AEDRSILITT YEGNHNHPLP PAAMAMASTT SAAASMLLSG 420 SMPSGDGLMN PNFLARTMLP CSSSMATISA SAPFPTVTLD LTHSPNPLQN QRQQVAPQIP 480 PNFLAAMPQL FGQALLNNNN NNNNNNNQSR FSGLHVSSSS EDPSQLQLPN QNNPGLADTL 540 SAATAAITSD PNFTAALAAA ISSIIGGAGR ENNNNVTNNA PLGNPPSSSG ATTSGNNNSN 600 SNNINNENNT NNVTSSSSLQ KQ

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MSHNNNSISF NNNDGRRNDQ VCRGVEFPVN LINNNHHTAG SGDHHDVHDD GVVRNNKVVG  60
EVDFFSGHHH NNNNNDDDDD DHVKEEESSR DPYHTSTAPD PTPHLPTVNT GLHLLTTNTG  120
SDQSTIDDSA SSDVEDKKAK QELAVLQVEL ERMNVENQKL KNMLSQVSQN YNALQMHLVN  180
LMQQQRLDKG ENQQQQQQQQ HEAITQGKVE EQNRSMIPRQ FLDLGPNANN ESNEQTSQTL  240
SDQDRTVLDR SLGSPQDMME IAPRNNNDGN SKDIMMYENG KGIIREESPD DSDTQGWVPN  300
KVPKLNVPRV ASPVEQAAAE ATMRKARVSV RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR  360
AYYRCTMAVG CPVRKQVQRC AEDRSILITT YEGNHNHPLP PAAMAMASTT SAAASMLLSG  420
SMPSGDGLMN PNFLARTMLP CSSSMATISA SAPFPTVTLD LTHSPNPLQN QRQQVAPQIP  480
PNFLAAMPQL FGQALLNNNN NNNNNNNQSR FSGLHVSSSS EDPSQLQLPN QNNPGLADTL  540
SAATAAITSD PNFTAALAAA ISSIIGGAGR ENNNNVTNNA PLGNPPSSSG ATTSGNNNSN  600
SNNINNENNT NNVTSSSSLQ KQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	326	402	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00428	DAP	Transfer from AT4G04450	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010686806.1	0.0	PREDICTED: probable WRKY transcription factor 31 isoform X1
Swissprot	Q9XEC3	1e-148	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	A0A0K9S1P8	0.0	A0A0K9S1P8_SPIOL; Uncharacterized protein
STRING	XP_010686806.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	1e-114	WRKY family protein