PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35154.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23420.9 Da    PI: 8.8964
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35154.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.7e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                kri nk+nrqvtfskRr+g+lKKA+EL +LCda++a+iifs t kly+y++
  Dca35154.1  9 KRIGNKINRQVTFSKRRQGLLKKANELAILCDAQIALIIFSDTKKLYTYPN 59
                79***********************************************95 PP
2K-box46.12.1e-16881521175
       K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                 +++ e+++q+++ Lk+ei+  ++++R +l e+L +L l+eL++ eqqL+++l  iR++K+++l +
  Dca35154.1  88 HNNLEQMYQQAEALKAEIRVAEQNIRFYLAEELPPLPLEELHKHEQQLDSALHAIRARKEQVLQA 152
                 57899*********************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.702161IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-28284IPR002100Transcription factor, MADS-box
CDDcd002651.94E-34282No hitNo description
PRINTSPR004047.5E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014866.4E-1489152IPR002487Transcription factor, K-box
PROSITE profilePS512979.08791182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRGKIEIKR IGNKINRQVT FSKRRQGLLK KANELAILCD AQIALIIFSD TKKLYTYPNT  60
FSSSSGLKKL DQIVQMYLDK NGIQMPLHNN LEQMYQQAEA LKAEIRVAEQ NIRFYLAEEL  120
PPLPLEELHK HEQQLDSALH AIRARKEQVL QADSGSMYHW FMGAGQEQLD LPFFGEDQPV  180
LQLATSSTTP QFYPYRFPST HPSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19160160MEF2C
5f28_B7e-19160160MEF2C
5f28_C7e-19160160MEF2C
5f28_D7e-19160160MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671448.16e-84PREDICTED: MADS-box protein FBP24 isoform X2
STRINGXP_010671447.11e-79(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.39e-35MIKC_MADS family protein