PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca35188.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 410aa MW: 46393.6 Da PI: 9.6789

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca35188.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	84	119	1	37
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 rg W + Ed +l+d+v q+G+ +W++Ia+++ gR++ Dca35188.1 84 RGHWRPAEDAKLKDLVLQFGPQNWNLIAEKFE-GRSG 119 899***************************.97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-8	64	122	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.811	79	137	IPR017930	Myb domain
SMART	SM00717	0.0044	83	134	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-7	84	119	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-10	85	122	IPR009057	Homeodomain-like
CDD	cd00167	5.03E-5	87	119	No hit	No description
CDD	cd15863	3.00E-21	318	383	No hit	No description
Pfam	PF12352	1.1E-16	321	384	No hit	No description
SuperFamily	SSF58038	2.4E-6	324	379	No hit	No description
Gene3D	G3DSA:1.20.5.110	2.8E-8	326	382	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MNMNMNMNDQ DHSLTLELSL SSSSSAASNH QNCEIGFQIW VPQLPSSVGG NVRKSEELEC 60 PENDRLSKKL RNNNVNVASK VCSRGHWRPA EDAKLKDLVL QFGPQNWNLI AEKFEGRSGT 120 FVESLRKATT TKRNTKSSTY GNETNDEIVS ERFRLVLDLE LGFSRFSLRG AVLRFQSSKK 180 MSGVVIGGGG TTLSEQYQSA KKLLLKIRDS LERLERLESS TSAGGASSPE LGFQIKNDIS 240 QLHSLCIDMD HLWRSVAVKS QRDLWKRKVE QIAEEADSLK DGLEKYFSRN QRCAQEAKER 300 AELLGRANGE SSHVLRIFDD EAQAFQSARN SSKMLEEAYS SGVAILSKFS EQRESMKNAH 360 RKLLDVLNTV GLSNSVLRLI ERRNRVDTWI KYAGMILTFI VLIVMWRWKH

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MNMNMNMNDQ DHSLTLELSL SSSSSAASNH QNCEIGFQIW VPQLPSSVGG NVRKSEELEC  60
PENDRLSKKL RNNNVNVASK VCSRGHWRPA EDAKLKDLVL QFGPQNWNLI AEKFEGRSGT  120
FVESLRKATT TKRNTKSSTY GNETNDEIVS ERFRLVLDLE LGFSRFSLRG AVLRFQSSKK  180
MSGVVIGGGG TTLSEQYQSA KKLLLKIRDS LERLERLESS TSAGGASSPE LGFQIKNDIS  240
QLHSLCIDMD HLWRSVAVKS QRDLWKRKVE QIAEEADSLK DGLEKYFSRN QRCAQEAKER  300
AELLGRANGE SSHVLRIFDD EAQAFQSARN SSKMLEEAYS SGVAILSKFS EQRESMKNAH  360
RKLLDVLNTV GLSNSVLRLI ERRNRVDTWI KYAGMILTFI VLIVMWRWKH

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021763182.1	1e-126	membrin-11-like
Swissprot	Q9SJL6	5e-99	MEM11_ARATH; Membrin-11
TrEMBL	A0A0K9RTX2	1e-123	A0A0K9RTX2_SPIOL; Membrin
STRING	XP_010684535.1	1e-119	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17800.1	5e-17	myb domain protein 56

Publications ? help Back to Top
Sanderfoot AA,Assaad FF,Raikhel NV The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Plant Physiol., 2000. 124(4): p. 1558-69 [PMID:11115874] Uemura T, et al. Systematic analysis of SNARE molecules in Arabidopsis: dissection of the post-Golgi network in plant cells. Cell Struct. Funct., 2004. 29(2): p. 49-65 [PMID:15342965] Latijnhouwers M, et al. An Arabidopsis GRIP domain protein locates to the trans-Golgi and binds the small GTPase ARL1. Plant J., 2005. 44(3): p. 459-70 [PMID:16236155] Chatre L,Brandizzi F,Hocquellet A,Hawes C,Moreau P Sec22 and Memb11 are v-SNAREs of the anterograde endoplasmic reticulum-Golgi pathway in tobacco leaf epidermal cells. Plant Physiol., 2005. 139(3): p. 1244-54 [PMID:16244155] Latijnhouwers M, et al. Localization and domain characterization of Arabidopsis golgin candidates. J. Exp. Bot., 2007. 58(15-16): p. 4373-86 [PMID:18182439] Marais C, et al. The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana. J. Exp. Bot., 2015. 66(21): p. 6665-78 [PMID:26208648]