PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35283.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 448aa    MW: 51175.5 Da    PI: 9.0803
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35283.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49.2e-124554499
                -EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                + W+v++  +   g+++l++GW+ F+ka+ L++gD+v+F+++++s f   vk+f +
  Dca35283.1  4 KCWRVEV--EDVEGTIYLRDGWNAFAKAHCLEVGDVVLFEYVEQSIF--QVKIFGQ 55
                6699***..999999**************************998988..9999875 PP
2B336.39.7e-121302051898
                 --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 +p     ++++    + +++l+d++g +W v+l   k+ g++++ +GWk+F   n++  gD++ Fk+++  ++   v+v r
  Dca35283.1 130 IPMAVGFKNKLTD--EEEVVLQDPKGDRWPVRL-GHKRTGHVLFIRGWKQFLIGNNIVIGDTLNFKFTS--QKLIEVHVAR 205
                 5555554555554..448***************.344445688889********************765..4435666655 PP
3B342.21.5e-132973741395
                 TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 ++ l++pk  a++ ++k++e   + l+d++g+ W ++++ +   gr+ ltkGW eF++   +k gD++ F++++   ++  ++
  Dca35283.1 297 RSYLYIPKAIARKQNLKNKE--NVALRDTNGKYWPLEVKTWYD-GRVALTKGWVEFCEGLAIKNGDTLEFEFVS--PRRIQIS 374
                 5679**********888655..6***************76655.6899***********************765..4444554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.985156IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-14258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-14258IPR015300DNA-binding pseudobarrel domain
PfamPF023627.2E-9454IPR003340B3 DNA binding domain
CDDcd100176.82E-10453No hitNo description
Gene3DG3DSA:2.40.330.103.1E-14113207IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.942115207IPR003340B3 DNA binding domain
SMARTSM010196.9E-4115207IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-14120207IPR015300DNA-binding pseudobarrel domain
PfamPF023626.7E-10129205IPR003340B3 DNA binding domain
CDDcd100171.31E-8144193No hitNo description
PROSITE profilePS5086312.774285379IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.4E-17287378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-17287378IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-8291379IPR003340B3 DNA binding domain
CDDcd100171.92E-9296377No hitNo description
PfamPF023628.5E-11297376IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MNKKCWRVEV EDVEGTIYLR DGWNAFAKAH CLEVGDVVLF EYVEQSIFQV KIFGQSGCLK  60
NTFVDRKESG PTTRKVIDIE EDTEDKNTNY IKRRATSRGR RKRKSSKVGE NGTSFSICLR  120
KKYQFLTQTI PMAVGFKNKL TDEEEVVLQD PKGDRWPVRL GHKRTGHVLF IRGWKQFLIG  180
NNIVIGDTLN FKFTSQKLIE VHVARRSERV ANHHHREANF CSSTDANGDC VEPQCNYATE  240
DVIVVDSVTP KKAECELKQC SYATEDVTVV ASVTPKKAER ELKCSSFSFL WCKKRTRSYL  300
YIPKAIARKQ NLKNKENVAL RDTNGKYWPL EVKTWYDGRV ALTKGWVEFC EGLAIKNGDT  360
LEFEFVSPRR IQISIHKRDH PHEIIIDDAT VDEEVTTTKG SANVLLDSGI AMGKMDIKGF  420
ASDLLALTKE HYLLQTPPGF QPIKQRVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191102KRRATSRGRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-14B3 family protein