PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35331.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family DBB
Protein Properties Length: 196aa    MW: 21170.7 Da    PI: 5.6604
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35331.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.62.5e-08333434
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                ++C+ +e+  +++fC  ++  lC+ C ++ H
  Dca35331.1  3 TICDVCESAAAIFFCAADEAALCRVCDEKVH 33
                68**************************998 PP
2zf-B_box27.56.5e-095392338
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                 +kC+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Dca35331.1 53 VPKCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrkHR 92
                689*****************************66666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.4E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
PfamPF006432.3E-6334IPR000315B-box-type zinc finger
CDDcd000218.72E-8345No hitNo description
SMARTSM003363.9E-145196IPR000315B-box-type zinc finger
PROSITE profilePS501199.3855196IPR000315B-box-type zinc finger
PfamPF006434.7E-75392IPR000315B-box-type zinc finger
CDDcd000214.15E-95493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MRTICDVCES AAAIFFCAAD EAALCRVCDE KVHLCNKLAS RHVRVGLDAP NAVPKCDICE  60
NAPAFFYCEI DGSSLCLQCD MVVHVGGKRK HRRYLLLRQR AEFPGDSSGR IEDANSQQPN  120
QASTEREQSN GVFVVPTLNG DNGTDAQIDA SMIDLNARPQ RTGIPSPNNQ GANVFAATND  180
DSASIVPRGF RGDPGK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690759.15e-99PREDICTED: B-box zinc finger protein 19 isoform X2
SwissprotC0SVM59e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0K9QIE53e-86A0A0K9QIE5_SPIOL; Uncharacterized protein
STRINGXP_010690759.12e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.16e-64DBB family protein