PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35461.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 130aa    MW: 14668.7 Da    PI: 7.1247
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35461.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.2e-118713298
                --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 sk +tl++++g + +v+l ++   g+++l++GW eFv+ n ++ g f+vF +  +s f  +v +f+
  Dca35461.1  8 LSKVVTLRTPTGYTRKVEL-VKEANGKTLLGNGWPEFVEYNAICHGYFLVFAYATNSLF--YVNIFD 71
                6789***************.45555679************************9988888..999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.814173IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-13375IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-14480IPR015300DNA-binding pseudobarrel domain
CDDcd100179.26E-10571No hitNo description
PfamPF023622.8E-8771IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MIDYGNDLSK VVTLRTPTGY TRKVELVKEA NGKTLLGNGW PEFVEYNAIC HGYFLVFAYA  60
TNSLFYVNIF DMTACEIEYP LPPQQSNQFK KEMTEVKRAS CTPSSSLKEY TSNACKGELE  120
ENKGKKNNGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6S2D78e-20A0A2R6S2D7_ACTCH; B3 domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-19B3 family protein