PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35481.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 210aa    MW: 23776.2 Da    PI: 9.3818
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35481.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.37.6e-151864354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                ++h ++E+rRRdriN+ +++Lr l+P +      K++Ka+ Le+Av+ Ik+L
  Dca35481.1 18 QSHRQAEKRRRDRINEQLSKLRNLIPMS-----DKMDKAALLERAVDQIKEL 64
                79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.3041564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-151773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-151868IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-121867No hitNo description
PfamPF000101.9E-121864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-122170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MQDFQANSSN LSPVSSSQSH RQAEKRRRDR INEQLSKLRN LIPMSDKMDK AALLERAVDQ  60
IKELKRETSE ISKFLTIPTD TDDITIEIQT NFRHRNAITH GGENKNTALI KATFCCEDRP  120
DLVPDLIRAL KGLKLTTIGA DFACLGGRIK IMLLLCFEND DDVCDYKEGG SNFRAIKQSL  180
MAVLTRLVSW SATASSFRVT SKRQRFFFAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021732497.14e-80transcription factor bHLH51-like
TrEMBLA0A249Y7972e-72A0A249Y797_9CARY; Transcription factor bHLH131
STRINGXP_010689462.11e-65(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.16e-39bHLH family protein