PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35504.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 539aa    MW: 62357.9 Da    PI: 9.3765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35504.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.27e-14199289199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+k    + + +++ l++p +f++++  +   ++ +tle+e+g+ +evk+    +  ++++++GW +F+  ++L  gD+ vF+l+++++f  +v ++rk
  Dca35504.1 199 FVKYVFAPKAARKSKLSIPPPFCRRYLPV--VDTVMTLETENGELYEVKY--LPR--GTTFSAGWGRFAFCKKLARGDIAVFHLVRSTRF--KVYIIRK 289
                 667777888889999***********433..4568***************..444..5779***********************997777..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-8158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-8158IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.574159IPR003340B3 DNA binding domain
CDDcd100171.91E-8157No hitNo description
SuperFamilySSF1019367.85E-18193289IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-15195289IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-15197288No hitNo description
PROSITE profilePS5086311.476199290IPR003340B3 DNA binding domain
SMARTSM010191.6E-13199290IPR003340B3 DNA binding domain
PfamPF023621.0E-11199289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MTLETENGEL YKVKYLPRAA AFTGGWGRFV VCEKLVQGDL AVFHLVSATR FKVYIIKKGS  60
STVILPTHLL KLYKKTSECV VDDNQFIVYK RRHSNDNCRN TEEVVETNFD NITGFEDSQT  120
VINNLLQHHD LSEVPPHAYY KQNNSQNEFL HRYLLKDLNP NLFVATKCQF TKDYDTKCEI  180
EISVLARVWN KSNFQQPIFV KYVFAPKAAR KSKLSIPPPF CRRYLPVVDT VMTLETENGE  240
LYEVKYLPRG TTFSAGWGRF AFCKKLARGD IAVFHLVRST RFKVYIIRKG SSTVKLPTHL  300
LKLYKKASEC VLGFEHFKTV INNSLQHHDL SEVILHAYYK LCSSQNAFLH EVLVKDLNPN  360
LFVGAISNII STTVNISTGL RTCTLSTFLD NVSDWSKTLE IYNSIGMNVS FLSSRLHDLH  420
NLAVSSEGTV SRRKYIKACR ERPRCEHEFQ KLKMILDKWR KIYVLLASKV KDLESKVGWE  480
AYMEAYYRHI QAKDEIREIE VLIGELSKFL EHYDDVIQSL KLKANKHEHE FITKAHAPW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-18B3 family protein