PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35546.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 514aa    MW: 55622.2 Da    PI: 5.3252
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35546.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.4e-126673398
                -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                +k+++l  +sg sW+v++  + +++  + ++GWk+F+k  +L+e+ ++vFk++++ +f   v +f+
  Dca35546.1  6 PKKVSLVGPSGSSWDVEV--STTGNVAIVGEGWKDFAKTYKLEENNMLVFKYTQNLSF--EVLIFD 67
                679***************..9999999*************************998777..677765 PP
2B336.11.1e-11402498197
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                 f  v+ p +v k+  l++p + +++h       ++  +++      ++We  + +y  +  +  l++GW++F+ +n+L++ D++vFk   ++ +   ++
  Dca35546.1 402 FHVVMQPTSVYKKFYLCIPAEWVDKHlscY---HQ--QVV-LRVGEKTWEAMFhNYGPYWHSAGLATGWESFALENNLEDSDVCVFKPAtQNdNALIFN 494
                 6788999*******************5321...23..355.55689*****993444444557899*********************542444555555 PP

                 EEEE CS
          B3  94 vkvf 97 
                 v +f
  Dca35546.1 495 VEIF 498
                 5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.858169IPR003340B3 DNA binding domain
SMARTSM010190.11169IPR003340B3 DNA binding domain
CDDcd100173.16E-12467No hitNo description
SuperFamilySSF1019362.35E-14568IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-9666IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-13668IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-13402499IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-9402499IPR003340B3 DNA binding domain
CDDcd100171.17E-14402499No hitNo description
Gene3DG3DSA:2.40.330.102.5E-15402499IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0012402496IPR003340B3 DNA binding domain
PROSITE profilePS5086310.306402501IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSCKMPKKVS LVGPSGSSWD VEVSTTGNVA IVGEGWKDFA KTYKLEENNM LVFKYTQNLS  60
FEVLIFDLKN LCEKEGSYFV KKGLSKPNDK VGRKRSVEEA ASREMMESND DGGGSDSVLS  120
KNSKRCSGGG ADNGKRNVVL EAPRATSSDD SSNDFSNADD DDVDPDFDLS ETARDDGVDA  180
VVVSSGGTPI CQKEAEITGC VTSEKLKKCS ADQGKKSVGE APVKTLVEFK SSDKTKTKAI  240
EVASSGVRTN VADVADDAPI SVLIFGLEAS NSKRLSAVKP SDNTTVNCTL NQQQQIPTGD  300
GEKAMNEAAV LSPGNNGYTL SNTLSAEAKN GKGTPGTIRS REVGAKKSPS VQVTPRSGKK  360
LALKSDTQRL STEYTSHRRP VTDEEKEAAL KRATEALTEG GFHVVMQPTS VYKKFYLCIP  420
AEWVDKHLSC YHQQVVLRVG EKTWEAMFHN YGPYWHSAGL ATGWESFALE NNLEDSDVCV  480
FKPATQNDNA LIFNVEIFRV VPEITPLTPV VCSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-20B3 family protein