PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35548.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 441aa    MW: 48668.8 Da    PI: 5.5468
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35548.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.1e-125683299
                --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 +k++tl  +sg sWev++  + +++ ++ ++GWk+F+k  +L+e+  ++Fk++++ +f   v +f++
  Dca35548.1  5 IPKKVTLIGPSGSSWEVEV--SMTGDLTLVGEGWKDFAKTYNLEENYLLMFKYTQDLRF--EVLIFDQ 68
                6789***************..8888889************************9886666..8998886 PP
2B337.44.4e-12327417192
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                 f+ v+ p  v k+  l++p + ++++ +   ++++++l+    ++W   + +y++++ +  l++GWk+F+ +n+L++ D+++Fk  ++  + +l
  Dca35548.1 327 FLVVMQPTAVYKTFYLSIPADWVNKNLSC--QHQKVILRV-GEKTWVTMFhNYSRGRHSGGLATGWKNFAIENNLEDSDVCIFKPASQkGDLTL 417
                 778899999**************999433..334677666.5566755552556666667799*********************7765344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.34E-12167No hitNo description
SMARTSM010190.037169IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731169IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-14468IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-13568IPR015300DNA-binding pseudobarrel domain
PfamPF023626.4E-9568IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-15322424IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-14326422IPR015300DNA-binding pseudobarrel domain
CDDcd100174.26E-14326425No hitNo description
PfamPF023621.8E-10327419IPR003340B3 DNA binding domain
SMARTSM010194.9E-6327422IPR003340B3 DNA binding domain
PROSITE profilePS5086310.461327425IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSGEIPKKVT LIGPSGSSWE VEVSMTGDLT LVGEGWKDFA KTYNLEENYL LMFKYTQDLR  60
FEVLIFDQEN LCEKECSYFV KKCLPNPNNT IDRTRSADEM TSTEIMEDYD DGGGSDSAIS  120
KKLKKCSADY GEKDVFETPR ATLSDTSSDD FSNDAVEVVR SGGRPIHQVS VSLVPKEADV  180
PEGISIAGLV PTNSMGQSGK PSDSNTTGIP MLSQLNSYQH TPTGNEKNEM YEAVILSPDN  240
NGIAVSNALS AEVNGNGTPG TSHSREVSAK RGRPVKQAIP RSRKKLAFKR DIRRPSVEYL  300
SHRRAVTDEE KAAALKRATE ASTEDSFLVV MQPTAVYKTF YLSIPADWVN KNLSCQHQKV  360
ILRVGEKTWV TMFHNYSRGR HSGGLATGWK NFAIENNLED SDVCIFKPAS QKGDLTLIFD  420
VNIIRVVPEI TPLTPLLCSI V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269285KRGRPVKQAIPRSRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-19B3 family protein