PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca35561.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 411aa MW: 47547.2 Da PI: 5.6406

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca35561.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.9	7.5e-09	159	251	7	90
FAR1 7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.......dgkwevtkle..leHnHela 90 A e GF ++k+++ ++ +++ e + f+C+++g++++ + +k ++++ +++++C+ +++v +++ w+++ + +HnHel+ Dca35561.1 159 AFENGFALVKATNGQKnRKQPELLASYFRCYRNGRSKSVYDP-DKPKKKTRTQKCDCDFRVRVVQNYhsidnkqGVIWNIMISKgfGNHNHELT 251 77899999887655488999**********999888.88888899999**999877655532212346655444559***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-6	158	251	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.9E-9	367	411	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MVDFDLNEYF DEEGENEIVV ENETENVVDN GNGGNLLEQA MVLFNGSNEG DDSQPPTEPK 60 VDMDFESGEQ FAAFCYIFFV KIGLEIASAL AIAWEIARSQ YPSNYHVFAA SCDLRISKIR 120 FKDSFEDFRG DDVDYNPLFV TKECFKDRDE AFDWANNVAF ENGFALVKAT NGQKNRKQPE 180 LLASYFRCYR NGRSKSVYDP DKPKKKTRTQ KCDCDFRVRV VQNYHSIDNK QGVIWNIMIS 240 KGFGNHNHEL TKYKDDHRHY AGLNEEKKAY IKQQYSFSAF SRDIKTDLHQ KTPSKPQPSS 300 KQIYNETSKF RRELKGERNQ EQQMLALAVE SNYVHWHETN PLKQELTHVF MSHPEAVKLF 360 RAYPHFVLMD STYKTNIYKM TLVEVVGFTP CGSSFLIACV LNPTESEEGY T

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MVDFDLNEYF DEEGENEIVV ENETENVVDN GNGGNLLEQA MVLFNGSNEG DDSQPPTEPK  60
VDMDFESGEQ FAAFCYIFFV KIGLEIASAL AIAWEIARSQ YPSNYHVFAA SCDLRISKIR  120
FKDSFEDFRG DDVDYNPLFV TKECFKDRDE AFDWANNVAF ENGFALVKAT NGQKNRKQPE  180
LLASYFRCYR NGRSKSVYDP DKPKKKTRTQ KCDCDFRVRV VQNYHSIDNK QGVIWNIMIS  240
KGFGNHNHEL TKYKDDHRHY AGLNEEKKAY IKQQYSFSAF SRDIKTDLHQ KTPSKPQPSS  300
KQIYNETSKF RRELKGERNQ EQQMLALAVE SNYVHWHETN PLKQELTHVF MSHPEAVKLF  360
RAYPHFVLMD STYKTNIYKM TLVEVVGFTP CGSSFLIACV LNPTESEEGY T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-