PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35574.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 311aa    MW: 34526.5 Da    PI: 5.2904
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35574.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.74.6e-361513311129
         NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107
                 d+el  +yLk kv gk+l   ++++evd+yk+ Pw+Lp k ++k+++ +wyf ++r+k+y+  +r nr+t +gyWk+tg d++    k+++vg  ktLv
  Dca35574.1  15 DDELFLFYLKGKVLGKSLGP-QMMSEVDVYKFAPWELPaKaCIKTRDLNWYFLCPRSKNYPDAERFNRVTVHGYWKSTGVDRTYNF-KNRTVGKIKTLV 111
                 99***************988.88**************95347888888***********************************999.8899******** PP

         NAM 108 fykgrapkgektdWvmheyrle 129
                 f++g++pkge+t+Wvmheyrle
  Dca35574.1 112 FHRGKTPKGERTNWVMHEYRLE 133
                 ********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.1945155IPR003441NAC domain
SuperFamilySSF1019415.49E-4413155IPR003441NAC domain
PfamPF023654.8E-1615132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTITRVGLGP QSWADDELFL FYLKGKVLGK SLGPQMMSEV DVYKFAPWEL PAKACIKTRD  60
LNWYFLCPRS KNYPDAERFN RVTVHGYWKS TGVDRTYNFK NRTVGKIKTL VFHRGKTPKG  120
ERTNWVMHEY RLEDKTLLDK GVAQDSYVIC KIYEKSGSGP KNGECYGAPF VEEEWESDSD  180
DSTPVVCNLE KSGTGGRNAV STVASTVDVG QSSAGPPTPS SVHEPPCAAL EGLLPNETEE  240
DEIEKWLTMF TEKNGIQKSD SRSLGNGLGD SDGSSSTWET GFDWSKLQSE DYSLDFGAAG  300
SVGVKHRRIG D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-381516127171NO APICAL MERISTEM PROTEIN
1ut4_B2e-381516127171NO APICAL MERISTEM PROTEIN
1ut7_A2e-381516127171NO APICAL MERISTEM PROTEIN
1ut7_B2e-381516127171NO APICAL MERISTEM PROTEIN
3swm_A3e-381516130174NAC domain-containing protein 19
3swm_B3e-381516130174NAC domain-containing protein 19
3swm_C3e-381516130174NAC domain-containing protein 19
3swm_D3e-381516130174NAC domain-containing protein 19
3swp_A3e-381516130174NAC domain-containing protein 19
3swp_B3e-381516130174NAC domain-containing protein 19
3swp_C3e-381516130174NAC domain-containing protein 19
3swp_D3e-381516130174NAC domain-containing protein 19
4dul_A2e-381516127171NAC domain-containing protein 19
4dul_B2e-381516127171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674451.11e-89PREDICTED: NAC domain-containing protein 82
SwissprotQ84K006e-57NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A0K9RG698e-81A0A0K9RG69_SPIOL; Uncharacterized protein
STRINGXP_010674451.15e-89(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-59NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]