PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca35631.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Trihelix

Protein Properties

Length: 322aa MW: 37606.1 Da PI: 4.3883

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca35631.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.1	8.4e-12	89	174	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +L+e+ e+ +l+r++l+ +W+ev++++ +++ e+ +C+++++ l+ +yk++k+ + + +s+++++++++ Dca35631.1 89 WSEEGTFVLLEIWGERFLQLGRSSLRSEDWKEVAERVsQATRAEIDVSECRNRMNVLKAKYKREKAKWGVLGGGGVSKWVFYRKID 174 ***********************************667788******************988887788999***9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-16	88	174	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MDRRTSFPYP LRSKPYRNFP SDDDDEDDAV LASVNDSDDN NHDDDGDDDE DYRGHRFRHE 60 IPTRHPRKQR KLSTLNYHFT PSSAAATTWS EEGTFVLLEI WGERFLQLGR SSLRSEDWKE 120 VAERVSQATR AEIDVSECRN RMNVLKAKYK REKAKWGVLG GGGVSKWVFY RKIDGLMTMS 180 PRQLQQQEQC GLACGVDSGE FVFMNPKVYL EHSNALDEMR DSPGNSESEG SDDEDEEEEE 240 DENGDKEEEE EEAEESYRML SESIQRVGEI YEKIEESKRR HMMELERMRA EFQRDLEVQK 300 KEMVDRTTAE IEKLSDRELS EV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021723675.1	1e-123	trihelix transcription factor ASIL1-like
TrEMBL	A0A0K9RIX0	1e-118	A0A0K9RIX0_SPIOL; Uncharacterized protein
STRING	XP_010688178.1	1e-119	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-70	Trihelix family protein