PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca35676.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

WRKY

Protein Properties

Length: 282aa MW: 30995.4 Da PI: 6.9003

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca35676.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.6	1.7e-30	77	135	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY ++Hnh+ Dca35676.1 77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLLITYASDHNHS 135 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-31	70	137	IPR003657	WRKY domain
PROSITE profile	PS50811	32.237	71	137	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-26	72	137	IPR003657	WRKY domain
SMART	SM00774	5.4E-36	76	136	IPR003657	WRKY domain
Pfam	PF03106	2.9E-25	78	134	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MENNKIGSSS YVTMNDHDND PQTSSENGMD SPVSSDERAT TTAPSPKKRR SIQKRVVQVR 60 IGDVEGGRGK SEAYPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRVD 120 PTMLLITYAS DHNHSVPTSK HHHHKTVVAA TVNNVGSPST PPTVPTTPST PIAIDEAIIE 180 HPGSPIRANP FGDPPHLEFV GDTLMLGNSG IEYNWISDFK FSTPAFVSPR YDDTEVAAFC 240 IREEDKSLFG DLDELPECST VFRHFQGRAE ICTHATSLCG ST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	9e-20	78	138	18	80	Disease resistance protein RRS1
5w3x_D	9e-20	78	138	18	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021843801.1	1e-119	probable WRKY transcription factor 65
Swissprot	Q93WV5	3e-63	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A0K9RD04	1e-118	A0A0K9RD04_SPIOL; Uncharacterized protein
STRING	XP_010689722.1	1e-115	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	2e-55	WRKY DNA-binding protein 69

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]