PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35913.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family E2F/DP
Protein Properties Length: 367aa    MW: 40598.2 Da    PI: 9.3659
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35913.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.42.1e-2792173271
     E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e               d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Dca35913.1  92 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEyadannalgnneqgyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 173
                 689********...*****999******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.0E-1261367IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.3E-4587178IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.3E-3491173IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-2493173IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-2194174IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.02E-43178281IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.46E-42179313No hitNo description
SMARTSM011382.6E-65180346IPR014889Transcription factor DP, C-terminal
PfamPF087811.6E-42181315IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MVTGTSQEDE DKKLKGITRS WGTAVSGQSI STSGSGGSPS SRSEAGMATP ARDSTVLRLS  60
HLEIQGDDSA SQSAVASKKK KRGQRATGND KSGRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEYADAN NALGNNEQGY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WRGLPRTSLN  180
DIEELKNERV ALRNRIEKKA AYLRELEEQY VGYQNLIQRN QELYGNGNTP SGGVALPFIL  240
VQTRPNATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKQ MKCSEKPRLD NGAVDRPGSS  300
RENPGMPNAY HPQISRPLSP NPHNAHVSRP SPPRPNQSQL SSSSSTTKTL ASPQVPGILK  360
SRVQNER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-3985178193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021762838.10.0transcription factor-like protein DPB
RefseqXP_021762839.10.0transcription factor-like protein DPB
RefseqXP_021762840.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-152DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0K9RGC00.0A0A0K9RGC0_SPIOL; Uncharacterized protein
STRINGXP_010678871.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-132Transcription factor DP