PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca36166.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 322aa    MW: 35871.1 Da    PI: 4.2427
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca36166.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.91.8e-07161204346
                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                  +k+ +r  kNR AA rsR+RKk+ ++eLe k+  +e+e ++L 
  Dca36166.1 161 LSKKRKRQLKNRDAAMRSRERKKKFVKELEMKSRYFEEECRRLG 204
                 57999*********************************998764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-10155218No hitNo description
SMARTSM003380.0072156223IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.668161224IPR004827Basic-leucine zipper domain
PfamPF077161.2E-6162203IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.34E-9163218No hitNo description
CDDcd147044.24E-11164215No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTTNTDEIDW ENILNFDDGV DNFDCFTAVG SPPEKAAVDT VVAELEDILM KDDDDDNGGV  60
SDDDYFRDFD FEVSDLLLDI PEIGGEPLSV EAEVVNTVVE DKNSPVSSAS VGNVVVEGGG  120
GGGVIGGLNY QENSPNFESN CEDDKSGDGD GDGDDDDDDP LSKKRKRQLK NRDAAMRSRE  180
RKKKFVKELE MKSRYFEEEC RRLGRLLNWC YAENQMLRIS LQTYGAPMTN PESAVLSLES  240
LLLGSLVWLM VNICLLPQPK LPLLNQCAAK LVSVDRNVLE NATPRGKGTR ISEPWIFLSF  300
MRSRRCRASR TKMKPRSDVC VF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163183KRKRQLKNRDAAMRSRERKKK
2164183RKRQLKNRDAAMRSRERKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855657.17e-64bZIP transcription factor 60
TrEMBLA0A0K9QFM62e-62A0A0K9QFM6_SPIOL; Uncharacterized protein
STRINGXP_010684737.17e-63(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.11e-11basic region/leucine zipper motif 60