PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca36694.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 278aa    MW: 32600.7 Da    PI: 8.0245
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca36694.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.16.8e-0972164790
        FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle......leHnHela 90 
                 A e GF ++k+++ ++ +++ e   + f+Cs++g++++  +  +k +++  +++++C+ +++  +++   d+kw+v            HnHel+
  Dca36694.1  72 AFENGFALVKATNGQKnRKQPELLASYFRCSRYGRSKSVYDP-DKPKKKPRTQKCDCEFRVRAVQNYhrvDNKWVVLWNIvvskdfGIHNHELT 164
                 7789**9998887655388999**************999888.677777777889999888866655678999998543334445566999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-672164IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDSPDFFLTV DGRPELSHLW LWTTHFIVLP WEDSPDSFED FRGDDVDYNP LFVTEVCFKD  60
GDEAFDWAKK VAFENGFALV KATNGQKNRK QPELLASYFR CSRYGRSKSV YDPDKPKKKP  120
RTQKCDCEFR VRAVQNYHRV DNKWVVLWNI VVSKDFGIHN HELTKYKDGH RHYAGLDEEE  180
KAYIKQQYSS SAFPRDIKTG LHQKTPSKPQ PSSRQIYYET SKVRRELRGE RNPAQQMLAL  240
AVESNYVHWH ETNPLTQELT HVFMSHPEAV KQLTVVVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120KPKKKPR
2115121PKKKPRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-