PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca36695.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 258aa    MW: 28181.4 Da    PI: 10.4676
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca36695.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.81.4e-10221240322
                 -SS-EEEEEEE--TT-SS-E CS
        WRKY   3 DgynWrKYGqKevkgsefpr 22 
                 D y+WrKYGqK++kgs++pr
  Dca36695.1 221 DDYSWRKYGQKPIKGSPYPR 240
                 99*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.2E-15174217IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-10207240IPR003657WRKY domain
SuperFamilySSF1182901.44E-8213241IPR003657WRKY domain
PROSITE profilePS5081112.335214240IPR003657WRKY domain
SMARTSM007746.2E-4219254IPR003657WRKY domain
PfamPF031067.1E-7221242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAVELMHGSH AGTTSVMEEY AIREAAAAGI QSVEKLIKLL SRCQDVNLKP NTMSSSSWND  60
VEYKDVADVV VSKFRKVISL LDRTRTGQAR FRRGPKQVLL TGSHGSAFTR VQVQCPPPKT  120
INFSTSAGNS VTTSYMSSLT GDIESVQPSV SSSGFQITNM SSLGKPPLSG NSLKRKCSSK  180
DVSNCGASSG RCHCSKQRKS RMKRVVRVPA ISVKTADIPP DDYSWRKYGQ KPIKGSPYPR  240
FVMPLCYISF NASLFTLL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021759456.18e-87probable WRKY transcription factor 7, partial
RefseqXP_021851375.15e-87probable WRKY transcription factor 7
SwissprotQ9STX02e-55WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A0K9QJ799e-86A0A0K9QJ79_SPIOL; Uncharacterized protein
STRINGVIT_18s0001g10030.t018e-79(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.17e-58WRKY DNA-binding protein 7