PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca36793.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 259aa    MW: 28799.5 Da    PI: 9.2475
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca36793.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.6e-18106160256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tk+q   Lee F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Dca36793.1 106 RKKLRLTKDQSAMLEESFKLQSTLNPKQKQALAERLDLLPRQVEVWFQNRRARTK 160
                 788899***********************************************98 PP
2HD-ZIP_I/II118.43.8e-38106195191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+k+q+++LEesF+ +++L+p++K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e++k+++++l++en+rL+kev+eL+ +l
   Dca36793.1 106 RKKLRLTKDQSAMLEESFKLQSTLNPKQKQALAERLDLLPRQVEVWFQNRRARTKLKQTEEDCEYMKKWCETLTDENKRLQKEVQELK-AL 195
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0009402739IPR018117DNA methylase, C-5 cytosine-specific, active site
SuperFamilySSF466898.98E-1792160IPR009057Homeodomain-like
PROSITE profilePS5007116.471102162IPR001356Homeobox domain
SMARTSM003894.1E-15104166IPR001356Homeobox domain
PfamPF000463.0E-15106160IPR001356Homeobox domain
CDDcd000865.93E-15106163No hitNo description
Gene3DG3DSA:1.10.10.601.4E-16106160IPR009057Homeodomain-like
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
SMARTSM003402.3E-22162205IPR003106Leucine zipper, homeobox-associated
PfamPF021832.9E-9162196IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSSYDNTLDL GLGLSSSHNR ANPKPQNNVH GGEPCLTLSL SGEKLAASAA SSMSNVVAVS  60
VKREREMTTS SDDEEDGSCA NINNNNNNNN SSNNNNNSNN NNIMTRKKLR LTKDQSAMLE  120
ESFKLQSTLN PKQKQALAER LDLLPRQVEV WFQNRRARTK LKQTEEDCEY MKKWCETLTD  180
ENKRLQKEVQ ELKALKLVQP FYMHLPTTTL SMCPSCEKIG PGGPITGKPV PVSKKGALAM  240
GSKSNFYPAR PNRPLLVDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110TRKKLRL
2154162RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680788.12e-93PREDICTED: homeobox-leucine zipper protein HAT22
SwissprotP466047e-70HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A199UAN16e-71A0A199UAN1_MANES; Uncharacterized protein
STRINGXP_010680788.19e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-65HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]