PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca36866.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 758aa    MW: 83363.8 Da    PI: 5.4184
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca36866.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.41.8e-21103158156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Dca36866.1 103 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 158
                 7999************************************************9877 PP
2START220.26.9e-692764975206
                 HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
       START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                  a++el+k+a ++ep+Wvks+    e++n+de+l++f   ++       +s+ea+r+sgvv+ +l++lv +++d++ qW+e+++    ka++++vi +g
  Dca36866.1 276 NALEELNKMAVSGEPLWVKSVetgrEILNYDEYLREFCCVESssggrsrRSIEASRESGVVFVDLPRLVHSFMDVN-QWKEMFPslisKAAVVDVIGNG 373
                 5789********************************9666557789******************************.********************** PP

                 ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
       START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                       g +qlm+aelq+l+p+vp R+++fvR+++ql+ ++w+ivdvS+d  +++  ++s+++++++pSg++ie+ s gh+kvtwveh+++++ ++h+l
  Dca36866.1 374 edpnknGSIQLMYAELQMLTPMVPtREVYFVRCCKQLSPEQWAIVDVSIDKLEDNI-DASLIKCRKRPSGCIIEDQSSGHCKVTWVEHMECQKTTVHSL 471
                 ******************************************************98.9***************************************** PP

                 HHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 181 lrslvksglaegaktwvatlqrqcek 206
                 +rs+v+sg+a+ga++w++tlq qce+
  Dca36866.1 472 YRSMVNSGVAFGARHWMSTLQLQCER 497
                 ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-2489154IPR009057Homeodomain-like
SuperFamilySSF466893.76E-2192161IPR009057Homeodomain-like
PROSITE profilePS5007118.155100160IPR001356Homeobox domain
SMARTSM003891.0E-18102164IPR001356Homeobox domain
PfamPF000461.1E-18103158IPR001356Homeobox domain
CDDcd000868.72E-18107158No hitNo description
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PROSITE profilePS5084837.615263500IPR002913START domain
SuperFamilySSF559611.88E-32265497No hitNo description
CDDcd088755.92E-106267496No hitNo description
SMARTSM002349.6E-67272497IPR002913START domain
PfamPF018521.6E-55276497IPR002913START domain
Gene3DG3DSA:3.30.530.206.6E-6313491IPR023393START-like domain
SuperFamilySSF559615.57E-13519691No hitNo description
Gene3DG3DSA:3.30.530.209.8E-4543614IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MGVDMSNNNN NQDLFASPAL SLSLAGIFRG GTAAEKSGEV EEGEEGSGGK REETVEISSE  60
NSGPARSRSE DAEYMMNIGE DEDDDGDDDG GGGGDEKGKK KRRKKYHRHT TEQIREMEAL  120
FKESPHPDEK QRQQLSKQLG LHPRQVKFWF QNRRTQIKAI QERHENSLLK TELEKLKDEN  180
KSLRECIHKS SCPNCGFAAT IGDPTLAADG QQQLKLENAR LKAEVEKLKA MVGPGTVSQS  240
ATCTTSDDHD NRSAALDSYT GVFGIDKEKI IEAVKNALEE LNKMAVSGEP LWVKSVETGR  300
EILNYDEYLR EFCCVESSSG GRSRRSIEAS RESGVVFVDL PRLVHSFMDV NQWKEMFPSL  360
ISKAAVVDVI GNGEDPNKNG SIQLMYAELQ MLTPMVPTRE VYFVRCCKQL SPEQWAIVDV  420
SIDKLEDNID ASLIKCRKRP SGCIIEDQSS GHCKVTWVEH MECQKTTVHS LYRSMVNSGV  480
AFGARHWMST LQLQCERLVF LMATNVPTKD SSGVATLAGR KSILNLAQRM TCSFCRALGA  540
SSFNAWTKVT TKSGDDVRVA SRKNTNNPGE PIGVILCAVF SIWLPVSPTT LFDFLRDDAQ  600
RHEWDVMATA CQVQSVANLS KGQDRGNAVS IQTLKSKETT TWVLQDSTTN TYESMVVYAP  660
IDTSSIQSVM TGCDSSNVAV LPSGFSILPD GMESRSLVLT SRQDEKNADG GSFLTIAIQV  720
VTNGSPAARL TAESVEPVSS LISCVVGNIK RSLHCEDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198102KKKRR
298103KKKRRK
398104KKKRRKK
499103KKRRK
599104KKRRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021736870.10.0homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0K9RPV80.0A0A0K9RPV8_SPIOL; Uncharacterized protein
STRINGXP_010691342.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]