PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca37091.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 596aa    MW: 64280.1 Da    PI: 6.9859
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca37091.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.3e-31243300260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  e+s  d++++ei+Y+g+H+h+k
  Dca37091.1 243 EDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFEQSP-DGHITEIIYKGTHDHPK 300
                 7****************************************.***************85 PP
2WRKY1084.5e-34417475159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+v+g+++prsYY+Ct++gCpv+k+ver+++dpk+v++tYeg+Hnhe
  Dca37091.1 417 LDDGYRWRKYGQKVVRGNPNPRSYYKCTHPGCPVRKHVERASHDPKAVITTYEGKHNHE 475
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-26238301IPR003657WRKY domain
SuperFamilySSF1182902.48E-24238301IPR003657WRKY domain
SMARTSM007744.6E-33242300IPR003657WRKY domain
PROSITE profilePS5081121.402243301IPR003657WRKY domain
PfamPF031068.4E-24243299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-38402477IPR003657WRKY domain
SuperFamilySSF1182907.59E-30409477IPR003657WRKY domain
PROSITE profilePS5081138.102412477IPR003657WRKY domain
SMARTSM007745.1E-40417476IPR003657WRKY domain
PfamPF031062.1E-26418475IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MHSSDDPPPP SSGEPPPSHA AAGRLLIASV DGSDLRRSAA ADRNNARYKM MSPAKLPISR  60
SPCMTVPPGL SPTSFLESPV FLSNFKGEPS PTTGSFFKPQ AMNSSPRGSS TCLPTTNNSN  120
ASDISQSGSF EFKPNAGSFS MGGFSFTGSM GSAAGLNQQQ AGQAMQTPEE RQSQSLEPAV  180
AVKNEMILHD DPKSTIVASG SGIVPEVDPN KSTQKPDYSN EVQALQSEQK GLGSQFLTDR  240
TSEDGYNWRK YGQKLVKGSE FPRSYYKCTH PNCEVKKLFE QSPDGHITEI IYKGTHDHPK  300
PQPNRRLPAG SLMSSLEEKS DRYPLTGQDG KLVSTYGQTA QNVEPSCSPE LSPGGGNDNT  360
EDVGASQLNH TPDDIDEDDP YAKRRRMEIG EMDINSVVKP IREPRVVVQT VSEVDILDDG  420
YRWRKYGQKV VRGNPNPRSY YKCTHPGCPV RKHVERASHD PKAVITTYEG KHNHEVPAAR  480
NSSHDTASRI GSHEMSDSVS LDLGVGIRSG STSYGPGQPN GMGAGHARGP AQYNGTNLAM  540
LQSAAYSSFP GYVNGGGMAL YGSRENHSQV LSIENQPVNN SSNSYPLNMG RILMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37243478878Probable WRKY transcription factor 4
2lex_A1e-37243478878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021740651.10.0probable WRKY transcription factor 20
SwissprotQ93WV01e-157WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2I7ZAQ00.0A0A2I7ZAQ0_SESPO; WRKY DNA-binding protein 25
STRINGXP_010675876.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-130WRKY family protein