PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca37214.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HD-ZIP

Protein Properties

Length: 274aa MW: 29779.6 Da PI: 8.1137

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca37214.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	124	178	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k Dca37214.1 124 RKKLRLTKHQSAMLEESFKLQSTLNPKQKQALAERLNLRPRQVEVWFQNRRARTK 178 678899***********************************************98 PP
2	HD-ZIP_I/II	120	1.2e-38	124	213	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q+++LEesF+ +++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+ +++l++en+rLekev+eL+ +l Dca37214.1 124 RKKLRLTKHQSAMLEESFKLQSTLNPKQKQALAERLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKYCETLSDENRRLEKEVQELK-AL 213 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-19	109	174	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.25E-18	114	181	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.989	120	180	IPR001356	Homeobox domain
SMART	SM00389	5.6E-15	122	184	IPR001356	Homeobox domain
CDD	cd00086	1.26E-15	124	181	No hit	No description
Pfam	PF00046	5.6E-16	124	178	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	155	178	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.6E-9	180	214	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.0E-22	180	223	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MDYEENSLTL GLGFPTSTLK PTLTSSTGAA PVLLEPTQLK VLRSDEPSLT LSLAGLGAEK 60 GEDPPCSAAS SASTAAAAAA SGVVASVKRE RESASSEEVD VAERGGFCRA SDEDDDGGNN 120 NPIRKKLRLT KHQSAMLEES FKLQSTLNPK QKQALAERLN LRPRQVEVWF QNRRARTKLK 180 QTEVDCEYLK KYCETLSDEN RRLEKEVQEL KALKLTHPFY NAGLPAATLT MCPSCERIGS 240 GVGASSVSKS TFTLAPKTHR LFSTPPNRPL LVDN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	180	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021718450.1	1e-90	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	6e-67	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A068U3C2	4e-84	A0A068U3C2_COFCA; Uncharacterized protein
STRING	XP_010680788.1	1e-89	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	9e-64	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]