PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca37232.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 819aa MW: 93780.7 Da PI: 6.6543

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca37232.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.3	8.3e-26	79	165	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 k+Y+eYAk++GF++++++s++sk+++ +++++f Cs++g + e++ + +r++++++t+Cka+++vk++k gkw+++++ +eHnHel p Dca37232.1 79 KYYQEYAKSMGFTTSIKNSRRSKKSRDFIDAKFACSRYGVTPESDAA----SRRSSVKKTDCKASMHVKRNKCGKWVIHEFIKEHNHELLP 165 69*************************************999887....89999******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-23	79	165	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-20	286	370	IPR018289	MULE transposase domain
Pfam	PF04434	5.5E-8	565	599	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.324	565	601	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-8	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MEFLSTNGHP SVSNCVVDQG ENVHHGDEDD ENIGDLINEV HDQAVGTLSS TTNNLLLEGD 60 IEMGPDSDLQ FESHEAAYKY YQEYAKSMGF TTSIKNSRRS KKSRDFIDAK FACSRYGVTP 120 ESDAASRRSS VKKTDCKASM HVKRNKCGKW VIHEFIKEHN HELLPALAYY FRIHGNVKLA 180 EKSNIDILHA VSERTKKVYV DMSRQAAAVP NLESSRDILG SQLGKGNRLV LEEGDAQFLI 240 DYCMCVKKEN PKFFYAIDLD DKQYLRNFFW VDAKSRSDYI SFSDAISLDT SYIRTNEKLP 300 LIIFVGVNHH LQAMLLGCAL VSDDLTSNFV WLMKTWLRAM GGNAPSVILT DQHPSLKPAI 360 QEVFPDSRHC YHLCNVLEEI PKNLPHIIKH HGNFAAKFNK CVFKSWTDEQ FELRWWKMVG 420 RFDLQENEWF RSLYEDRKMW IPLYIDDAFL AGMSSVHQAE SVNSFFDKYI QRKLTLKEFV 480 KQYGLILQNR YEEEAIADFD TWHKQPALKS PSPWEKQMST LYTHAIFKKF QVEVLGVVGC 540 HPKKELEDGN SVTYRVEDCE KDETFFVTWN EGKSQVSCSC RSFEYRGFLC RHAMLVLQIC 600 GISSIPTQYI LQRWTKDAKT SQLMVEGTEQ IRTRAQRYVA LSRQAIELSE EGSLTQESHN 660 IALRALVDAL KNCISINDAN KSAIEAGNET PGAHYVEGYQ GKMSTRRFKK KNTAKKQRDN 720 LGSDSISLNG YYGSHQNTQG MVQLNLMEPP HDSYYVDEES MQGLGQLNSM GQSHDEFFGA 780 QHSVHGLGHM DFRPSTSFSY SLEDEHNLRS TELHRDASR

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MEFLSTNGHP SVSNCVVDQG ENVHHGDEDD ENIGDLINEV HDQAVGTLSS TTNNLLLEGD  60
IEMGPDSDLQ FESHEAAYKY YQEYAKSMGF TTSIKNSRRS KKSRDFIDAK FACSRYGVTP  120
ESDAASRRSS VKKTDCKASM HVKRNKCGKW VIHEFIKEHN HELLPALAYY FRIHGNVKLA  180
EKSNIDILHA VSERTKKVYV DMSRQAAAVP NLESSRDILG SQLGKGNRLV LEEGDAQFLI  240
DYCMCVKKEN PKFFYAIDLD DKQYLRNFFW VDAKSRSDYI SFSDAISLDT SYIRTNEKLP  300
LIIFVGVNHH LQAMLLGCAL VSDDLTSNFV WLMKTWLRAM GGNAPSVILT DQHPSLKPAI  360
QEVFPDSRHC YHLCNVLEEI PKNLPHIIKH HGNFAAKFNK CVFKSWTDEQ FELRWWKMVG  420
RFDLQENEWF RSLYEDRKMW IPLYIDDAFL AGMSSVHQAE SVNSFFDKYI QRKLTLKEFV  480
KQYGLILQNR YEEEAIADFD TWHKQPALKS PSPWEKQMST LYTHAIFKKF QVEVLGVVGC  540
HPKKELEDGN SVTYRVEDCE KDETFFVTWN EGKSQVSCSC RSFEYRGFLC RHAMLVLQIC  600
GISSIPTQYI LQRWTKDAKT SQLMVEGTEQ IRTRAQRYVA LSRQAIELSE EGSLTQESHN  660
IALRALVDAL KNCISINDAN KSAIEAGNET PGAHYVEGYQ GKMSTRRFKK KNTAKKQRDN  720
LGSDSISLNG YYGSHQNTQG MVQLNLMEPP HDSYYVDEES MQGLGQLNSM GQSHDEFFGA  780
QHSVHGLGHM DFRPSTSFSY SLEDEHNLRS TELHRDASR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675660.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_010675661.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_010675662.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_010675663.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_019104685.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_019104687.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	F6HTN0	0.0	F6HTN0_VITVI; Uncharacterized protein
STRING	XP_010675660.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]