PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca37237.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 416aa    MW: 47415.1 Da    PI: 6.7905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca37237.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13186236154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k++
  Dca37237.1 186 QRMTHIAVERNRRRQMNDHLNALRSLMPPS---YVQRGDQASIIGGAIDFVKEM 236
                 79****************************...9*****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16178249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-11184241No hitNo description
PROSITE profilePS5088815.307185236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-11186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-14186252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10191242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd021160.00519345407No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
LIGEDVDVGW LEEFVSNTGS AFKFEDSFCE EGYDSTRTLY SIPSLEDKMP FLQMLQGVEL  60
PAQPTVVPFM HEQNNYFQFL LGLQHQKMFL DNNSNNNNNF SCSFTSELDC SNDIVIKSET  120
TFREEQQATQ ISPPPQQCDT NGENKTRRGR SKRSLNGAGG CAPKERRKRK RPVKATTKNK  180
EEVETQRMTH IAVERNRRRQ MNDHLNALRS LMPPSYVQRG DQASIIGGAI DFVKEMEQLL  240
QSLQAQKRMR HDSVENIDII STTTTTSTSS IFMTSPTSPL QYRNFSPNDE NNTNNNANNY  300
TEVKRNNNNN NNSINNSINN EEFSAENRSA LADIKVVVIQ NHVNLKIECH RRPGQLLKVI  360
LAFEQLRLTV LHLNITSLHA LVHYSFNLKI EEDCKVGTAE EVVRAVHHIF SMINLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164171ERRKRKRP
2165170RRKRKR
3186197RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106885.11e-126PREDICTED: transcription factor bHLH67 isoform X2
TrEMBLA0A0K9RJ711e-118A0A0K9RJ71_SPIOL; Uncharacterized protein
TrEMBLA0A0K9RKS41e-118A0A0K9RKS4_SPIOL; Uncharacterized protein
STRINGXP_010688515.11e-125(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.17e-54bHLH family protein