 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Dca37302.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
| Family | C2H2 | ||||||||
| Protein Properties | Length: 269aa MW: 30024.2 Da PI: 7.0334 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 15.6 | 4.8e-05 | 158 | 178 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23
C++Cgk F ++ ++++H+++ H
Dca37302.1 158 CNKCGKAF-QQAEMEKHMKVfH 178
********.**********988 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00355 | 130 | 38 | 66 | IPR015880 | Zinc finger, C2H2-like |
| SMART | SM00355 | 2.7 | 156 | 178 | IPR015880 | Zinc finger, C2H2-like |
| SMART | SM00355 | 130 | 207 | 235 | IPR015880 | Zinc finger, C2H2-like |
| SMART | SM00355 | 160 | 244 | 266 | IPR015880 | Zinc finger, C2H2-like |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 269 aa Download sequence Send to blast |
MEKHMKVFHE PHQCSCGVIL EKEEMVQHQS TVCPMRMITC RFCGDVVPAG SSPMDMRDHL 60 RGLSEHESLC GSRTAPCDSC GRXISLHIQE NSNQVQQAGL STSSLEADVA ECGNCKHFIP 120 SRSIALHEAY CRRHNVICQH SGCGVVLRVE DAKNHVHCNK CGKAFQQAEM EKHMKVFHEP 180 HQCSCGVILE KEEMVQHQST VCPMRMITCR FCGDVVPAGS SPMDMRDHLR GLSEHESLCG 240 SRTAPCDSCG RSVMLKEMEI HRIAVHPNN |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021765555.1 | 1e-110 | uncharacterized protein LOC110730092 | ||||
| TrEMBL | A0A0K9RU25 | 1e-107 | A0A0K9RU25_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010677397.1 | 1e-109 | (Beta vulgaris) | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|