PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca37358.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 424aa    MW: 47794.3 Da    PI: 6.4296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca37358.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12248293454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++Ns+f  Lr ++P        K++Ka+ L  +v YI++L
  Dca37358.1 248 NHVEAERQRREKMNSRFYALRAVVPYV-----SKMDKASLLSDTVSYINEL 293
                 699***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.9E-3628195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.742244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-18246309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10248293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17248309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-14248298No hitNo description
SMARTSM003531.7E-15250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDEKFMMSSS STSSSSLVAN LQDSPPNLQS NLQFLLQNQP LWWNYAILWQ TCILTINNVE  60
TLTLTWAEGH FNGFKSPSSK PTKKPIIPHD YVDGEYSSMD DMVSDVEWFY MTSPVKSHKV  120
KQGGVLSKAY TSGSLVWLSG SHSLGSYKCD RVKEAESHGL ETLVVIPVLK GVLELGSVDL  180
IEENWALVKQ AHHLFGPMTY NDKQIVSPMC LSESSFDDSD RLTRQEKVEK RRGKRGDQGC  240
RGQPTTFNHV EAERQRREKM NSRFYALRAV VPYVSKMDKA SLLSDTVSYI NELKSKIQSL  300
ESQLQVTRNS TPKSDNCSTT MEVEDANIFT VSSKNYGKEV STRIPPVVEV KMVGNQAMIR  360
VQSENVNYPC ARLLEVLKEI NVGVQHATMS TLNDLMLQDI VISTVPREIC GEDELKDAIL  420
RRFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-21242309269Transcription factor MYC2
5gnj_B1e-21242309269Transcription factor MYC2
5gnj_E1e-21242309269Transcription factor MYC2
5gnj_F1e-21242309269Transcription factor MYC2
5gnj_G1e-21242309269Transcription factor MYC2
5gnj_I1e-21242309269Transcription factor MYC2
5gnj_M1e-21242309269Transcription factor MYC2
5gnj_N1e-21242309269Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767200.11e-137transcription factor MYC2-like
TrEMBLA0A0K9QWB91e-117A0A0K9QWB9_SPIOL; Uncharacterized protein
STRINGXP_010691764.11e-128(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-54bHLH family protein