PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca37369.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 355aa MW: 40559.9 Da PI: 6.3647

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca37369.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	157	207	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+i A++++k++ Dca37369.1 157 QRMTHIAVERNRRRLMNDHLNALRSLMPPS---YVQRGDQASIIGGAIDFVKDM 207 79**************************...9***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.58E-16	155	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.11E-11	155	212	No hit	No description
PROSITE profile	PS50888	14.894	156	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-12	157	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-10	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-9	162	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MEKLQGAVNP CLVGEDLDAS WLDEFVSNYA FEDPYNNTED LLANSDDKMP FMQMLQGVES 60 AGLASVPIIQ EPNYFQLLLK LQHQKMEHPQ HIYCSNFAST TEVECTVKSE TCVEEHKHEH 120 EHAAEFAKMM SNVAPKERRK RKRASRAMKN KEEAESQRMT HIAVERNRRR LMNDHLNALR 180 SLMPPSYVQR GDQASIIGGA IDFVKDMEQL LQSLEGQKRM KQCHEDDNTT STTSSSNLMN 240 NNDPIEDVGR RNNKNNNNSE ELSVEKRGEV GDIKVVVIQS HVNLKIECQR RPGQLMRAIL 300 GFEQLRLTIL HLNITSLHTL VHYSFNLKIE DDCKLGTTDE VLKAVHHVFG LTNVH

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MEKLQGAVNP CLVGEDLDAS WLDEFVSNYA FEDPYNNTED LLANSDDKMP FMQMLQGVES  60
AGLASVPIIQ EPNYFQLLLK LQHQKMEHPQ HIYCSNFAST TEVECTVKSE TCVEEHKHEH  120
EHAAEFAKMM SNVAPKERRK RKRASRAMKN KEEAESQRMT HIAVERNRRR LMNDHLNALR  180
SLMPPSYVQR GDQASIIGGA IDFVKDMEQL LQSLEGQKRM KQCHEDDNTT STTSSSNLMN  240
NNDPIEDVGR RNNKNNNNSE ELSVEKRGEV GDIKVVVIQS HVNLKIECQR RPGQLMRAIL  300
GFEQLRLTIL HLNITSLHTL VHYSFNLKIE DDCKLGTTDE VLKAVHHVFG LTNVH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	142	RRKRKR
2	157	168	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021767228.1	1e-116	transcription factor bHLH57-like isoform X1
TrEMBL	A0A0K9RKS4	1e-111	A0A0K9RKS4_SPIOL; Uncharacterized protein
STRING	XP_010688515.1	1e-92	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	4e-62	bHLH family protein