PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca37372.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 677aa    MW: 73430.2 Da    PI: 7.4473
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca37372.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-152468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
       Dca37372.1 24 RERWTDEEHNKFLEALKLYGRA-WQRIEEYIG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.73E-171874IPR009057Homeodomain-like
PROSITE profilePS5129419.831973IPR017930Myb domain
TIGRFAMsTIGR015571.8E-162271IPR006447Myb domain, plants
SMARTSM007171.4E-122371IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-82464IPR009057Homeodomain-like
PfamPF002491.0E-122467IPR001005SANT/Myb domain
CDDcd001672.51E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MDAYSSGEEL LVKTRKPYTI TKQRERWTDE EHNKFLEALK LYGRAWQRIE EYIGTKTAVQ  60
IRSHAQKFFS KIEKEAVVKG VRIGQAINLE IPPPRPKRKP SNPYPRKNGT VCSPITQIRA  120
KDGKHVPPGS SQSAKPLNLD RDPRSEELPS SPGTPRQSPA TATDVARKLS NSNESAPVGK  180
TSVNGERSEP RAADGPNVNH KLDKPDSVEV SQNVSKKEMH AAKGFPRHAP VQILDASQGT  240
CSQGFSSDVS YQETKAPMEF FAGHPLFSHP AVSGAVESEN STFRSSSQQI HPSFHPLLNN  300
QGDHSSFLQM SSTFSSLILS VLLQNPAAYA AATSAASLWP TANIEKSVNS VSGNDGEFSA  360
RPTHPAPSMA AIAAATVAAA TAWWAAHGLL PVCAPFPAFS PPSVAAPFAN TRQLTAANDE  420
EKEKNNIHIP DSQIRQNSAP KSSATSSSSD SRNTEKVMDI GVEHTDAEEA PQISDPKDAS  480
KLKNKQVDRS SCGSNTPSGS DAETDALGKN DKGNEESKEP DENHTASDLS GRRIRIFGNT  540
NDSWKEVSEE GRLAFQALFS KGRLPQSFSP PQNIAQNIEQ SKEDASQLDL NSNPWECVSC  600
DHVTGKTETT SQGNANSKDE TLTIGLLQAK LTGNKTGFKP YKRCSVEARE NKMINSSNQE  660
QGNCSKRLRL EEEAASI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687317.10.0PREDICTED: protein LHY isoform X1
RefseqXP_019106653.10.0PREDICTED: protein LHY isoform X1
TrEMBLQ6UEI80.0Q6UEI8_MESCR; Circadian clock associated1
STRINGXP_010687317.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.41e-46MYB_related family protein