PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca37501.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 161aa    MW: 18269.3 Da    PI: 9.0124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca37501.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.2e-292986359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                D ++WrKYGqK++ gs++pr+YYrC++a gC+++k+ver+++d +v+ itY++ Hnh+
  Dca37501.1 29 DSWSWRKYGQKPISGSPYPRGYYRCSTAkGCTARKRVERCRDDASVLLITYTSPHNHN 86
                99***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-292087IPR003657WRKY domain
SuperFamilySSF1182903.66E-252487IPR003657WRKY domain
SMARTSM007741.6E-322787IPR003657WRKY domain
PfamPF031063.9E-242985IPR003657WRKY domain
PROSITE profilePS5081128.0362988IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
KVGEKKVVRV KIEAKANSNN GDQLPPPPDS WSWRKYGQKP ISGSPYPRGY YRCSTAKGCT  60
ARKRVERCRD DASVLLITYT SPHNHNHKKK LTNKERQIQS PTEETSASKV EEVKEEHEAS  120
YVITADRSAP SYSLYNSPIP QLPYDIDDGS DFYNALHDLP F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1729851876Disease resistance protein RRS1
5w3x_D1e-1729851876Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836293.11e-38probable WRKY transcription factor 65
SwissprotQ9LP562e-32WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLK4EN487e-37K4EN48_PANQU; WRKY4
STRINGXP_010267989.18e-35(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.17e-32WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]