PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca37548.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NF-YC

Protein Properties

Length: 281aa MW: 31133.6 Da PI: 4.8188

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca37548.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.3	8.6e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ ++++ ++fdfl div + Dca37548.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIQRGAKTMSSLHLKHCINSFTMFDFLKDIVSK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.7E-25	3	71	IPR009072	Histone-fold
SuperFamily	SSF47113	2.19E-20	4	89	IPR009072	Histone-fold
Pfam	PF00808	3.3E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITIQRGAK 60 TMSSLHLKHC INSFTMFDFL KDIVSKVPDY GNSDTAGVEN HAAIKRRKTA VDEYHDSDEE 120 SKKIRMQETS HASSSGRGRG RGRGRGRGRG RPPVERELSA HHEMEAETST SFEPINKPVP 180 IQVPNIEDDP DKDLMKESPV VGHAGDMAVR NFDLNAEVAE NPDVAAGATT ESTVNASSVE 240 QSAPESKNEE LVSEVDGMAI DPHQIAQFNS RIDEDEDYDE E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	149	RGRGRGRGRG
2	140	150	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010670583.1	1e-139	PREDICTED: dr1-associated corepressor
TrEMBL	A0A0K9RC39	1e-136	A0A0K9RC39_SPIOL; Uncharacterized protein
STRING	XP_010670583.1	1e-138	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-64	nuclear factor Y, subunit C11