PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca37633.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family M-type_MADS
Protein Properties Length: 546aa    MW: 59322.5 Da    PI: 6.3298
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca37633.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.15.6e-141663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ienk  r ++fskRr gi KKA+EL  L +a+  +++fs+++k y +
  Dca37633.1 16 KIENKDDRLISFSKRRSGIYKKASELTSLSNAKLGILMFSESDKPYSF 63
                69****************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.053767IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-17766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-18986IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-12929IPR002100Transcription factor, MADS-box
PfamPF003194.6E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-124465IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.50.7206.8E-23164232IPR016040NAD(P)-binding domain
SuperFamilySSF517354.33E-17165231IPR016040NAD(P)-binding domain
PfamPF034466.5E-17165231IPR0061156-phosphogluconate dehydrogenase, NADP-binding
PROSITE patternPS008950168181IPR0022043-hydroxyisobutyrate dehydrogenase-related, conserved site
SuperFamilySSF517357.44E-34232404IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7207.0E-53233405IPR016040NAD(P)-binding domain
PfamPF034465.9E-36233403IPR0061156-phosphogluconate dehydrogenase, NADP-binding
PROSITE patternPS008950236249IPR0022043-hydroxyisobutyrate dehydrogenase-related, conserved site
TIGRFAMsTIGR016921.7E-100236533IPR0115483-hydroxyisobutyrate dehydrogenase
Gene3DG3DSA:1.10.1040.102.9E-38406534IPR0133286-phosphogluconate dehydrogenase, domain 2
SuperFamilySSF481791.25E-33406534IPR0089276-phosphogluconate dehydrogenase C-terminal domain-like
PfamPF148333.2E-28407532IPR0291543-hydroxyisobutyrate dehydrogenase, NAD-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0004616Molecular Functionphosphogluconate dehydrogenase (decarboxylating) activity
GO:0008442Molecular Function3-hydroxyisobutyrate dehydrogenase activity
GO:0046983Molecular Functionprotein dimerization activity
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MARNPSIRRR RTVLRKIENK DDRLISFSKR RSGIYKKASE LTSLSNAKLG ILMFSESDKP  60
YSFGAPDFKT ISDHFRGAIA SSSTNSPTNN TLANIMHAFK QGKSYESNHE YADLCNRLEI  120
SKKDGVEISK TFDTIKSQLW WETPLEDLTQ QQMDQLTDLM EKIGNVGFVG LGNMGSRMAN  180
NLIKSGYEVS VYDINIASVK PFLDRGVPVK QTPAEIAEAS DVVITMLPSP SHNVGFVGLG  240
NMGSRMANNL IKSGYEVSVY DINIASVKPF LDRGVPVKQT PAEIAEASDV VITMLPSPSH  300
VMNVFMGVNG LLHSSSSLRP WLFIDCSTID PLTSRKVSLA VSDCSLKENL DFPERPMMLD  360
APVSGGILAA EAASLSFMVG GREDAYLAAE PLFLSMGRAP IYCGGSGNGS VAKICNNLAL  420
SISMIGVSEA LAIGQSLGVP ATTLTKIFNS SSARCWSSDS YNPVPGVMEG VPSSKNYQGG  480
FASKLMAKDL DLAAASAKEA DVQHPLTRQA QQIYHEICKE GNELRDFSCV FREYYGGKDE  540
FNGEDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gf2_A3e-8716653232893-hydroxyisobutyrate dehydrogenase
2gf2_B3e-8716653232893-hydroxyisobutyrate dehydrogenase
2gf2_C3e-8716653232893-hydroxyisobutyrate dehydrogenase
2gf2_D3e-8716653232893-hydroxyisobutyrate dehydrogenase
2i9p_A4e-87166532223113-hydroxyisobutyrate dehydrogenase
2i9p_B4e-87166532223113-hydroxyisobutyrate dehydrogenase
2i9p_C4e-87166532223113-hydroxyisobutyrate dehydrogenase
2i9p_D4e-87166532223113-hydroxyisobutyrate dehydrogenase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021735563.11e-179probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X2
SwissprotQ9SUC01e-1523HIDH_ARATH; Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial
TrEMBLA0A0J8BQZ31e-173A0A0J8BQZ3_BETVU; 3-hydroxyisobutyrate dehydrogenase
STRINGXP_010687084.11e-173(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.19e-18AGAMOUS-like 91
Publications ? help Back to Top
  1. Lucas KA,Filley JR,Erb JM,Graybill ER,Hawes JW
    Peroxisomal metabolism of propionic acid and isobutyric acid in plants.
    J. Biol. Chem., 2007. 282(34): p. 24980-9
    [PMID:17580301]
  2. Schertl P,Danne L,Braun HP
    3-Hydroxyisobutyrate Dehydrogenase Is Involved in Both, Valine and Isoleucine Degradation in Arabidopsis thaliana.
    Plant Physiol., 2017. 175(1): p. 51-61
    [PMID:28705827]