PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca37828.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 611aa MW: 70113.5 Da PI: 7.8247

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca37828.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.4	1.9e-07	98	189	4	90
FAR1 4 neYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YA + GF+v ++++ + + + ++r+f +ke + + ++ + ++ +++++ tgCka ++ +e ++ +++++++l+HnHel Dca37828.1 98 FTYAMKKGFEVFTRSNVINpEYKAAGVSREFGGKKEPRYHMFDRLrlackKGGRKCSENSNVTGCKAVFEGALE-NDGFQIKSIKLDHNHELD 189 58******999988877544555577788766666555554448888666677799999********9.999***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-5	98	190	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-23	310	390	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.695	404	440	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-5	406	433	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.0E-4	415	442	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MSNNGGLFDL NEYFDEDYEG NKDFDEEIEA NEVHNDGRSV DESVQNSIDE VGSTQESPNL 60 VQQAVNVVEA DNLNNDDIVE PKVGMIFPNC ESFAAFIFTY AMKKGFEVFT RSNVINPEYK 120 AAGVSREFGG KKEPRYHMFD RLRLACKKGG RKCSENSNVT GCKAVFEGAL ENDGFQIKSI 180 KLDHNHELDP ANSRFTISAR IITDYFKKRI MLNDRAGIPI TKNFNAMVLK AGGHENLPFN 240 RRDLRNLVNL ERRLERINGD AAALEEYFVK MKADNPDFFY AIKKDNEGRL QNVFWADARC 300 QAMFKVFGEV VTYDTTFLCN RYRLPFSPFI GVNHHGNSIC FAAALITNED TDTFIWVFER 360 WLECMGKAPP VILSDQDKAI GKAIETVFPE QIVQPFWKEG FRTYEVTIDK DMGVFKCSCQ 420 LFEFKGILCK HIIQCIVKEN IKSIPETYIL DRWRKDLIRG YEHIRVGYYN PEEVESVKRA 480 MKIKNKNAYI EKLSLHNDET YAMYEKVSDE HIKQLENIVG IETVRSTLDA NGISKVVGRR 540 RTQPRECNMR HIARNTTQRS NSQLKDPVDK RGTSRGPKPK QTTTRKRKGG AIPQSPLSQR 600 SRVSSELDLF R

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MSNNGGLFDL NEYFDEDYEG NKDFDEEIEA NEVHNDGRSV DESVQNSIDE VGSTQESPNL  60
VQQAVNVVEA DNLNNDDIVE PKVGMIFPNC ESFAAFIFTY AMKKGFEVFT RSNVINPEYK  120
AAGVSREFGG KKEPRYHMFD RLRLACKKGG RKCSENSNVT GCKAVFEGAL ENDGFQIKSI  180
KLDHNHELDP ANSRFTISAR IITDYFKKRI MLNDRAGIPI TKNFNAMVLK AGGHENLPFN  240
RRDLRNLVNL ERRLERINGD AAALEEYFVK MKADNPDFFY AIKKDNEGRL QNVFWADARC  300
QAMFKVFGEV VTYDTTFLCN RYRLPFSPFI GVNHHGNSIC FAAALITNED TDTFIWVFER  360
WLECMGKAPP VILSDQDKAI GKAIETVFPE QIVQPFWKEG FRTYEVTIDK DMGVFKCSCQ  420
LFEFKGILCK HIIQCIVKEN IKSIPETYIL DRWRKDLIRG YEHIRVGYYN PEEVESVKRA  480
MKIKNKNAYI EKLSLHNDET YAMYEKVSDE HIKQLENIVG IETVRSTLDA NGISKVVGRR  540
RTQPRECNMR HIARNTTQRS NSQLKDPVDK RGTSRGPKPK QTTTRKRKGG AIPQSPLSQR  600
SRVSSELDLF R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-44	FAR1-related sequence 5