PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca37896.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GATA
Protein Properties Length: 231aa    MW: 25613.1 Da    PI: 7.2026
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca37896.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-194780134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                C+ C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Dca37896.1 47 CTDCHTTTTPLWRSGPQGPKSLCNACGIRQRKAR 80
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.33E-133980No hitNo description
SMARTSM004012.7E-194193IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-154580IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.1784577IPR000679Zinc finger, GATA-type
PfamPF003205.0E-174780IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404772IPR000679Zinc finger, GATA-type
CDDcd002021.65E-75678No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MIIGDHNLNY DHGNYNLHAQ VKQSNMYYHK SRNEIIKKNN NNFIRTCTDC HTTTTPLWRS  60
GPQGPKSLCN ACGIRQRKAR RAAAAAAAAA MAPMDDDAPL PSPISSTTTT TTTTTTPTTS  120
PKLTLEVEEV KSPKNLDHET IIMTHTLPLK KRSKTFNDHT SWNYNNSASN NNNINSSNND  180
NDNDNMDNNN NNDDDYSSRP SNYSTQRVFP KDEEEGAILL MALSCGLACS S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021749841.11e-39putative GATA transcription factor 22
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-10GATA family protein