PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca37955.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family M-type_MADS
Protein Properties Length: 349aa    MW: 38326 Da    PI: 4.4291
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca37955.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.85.1e-12237281145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                 k+i+nk  r+vtfskRr+g++KK    S L + + a i fs  gk
  Dca37955.1 237 KKIDNKQSRNVTFSKRRQGLFKKCADFSSLYGSQYAAIAFSIAGK 281
                 68********************************99999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-16229288IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.138229289IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-16230293IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-11231251IPR002100Transcription factor, MADS-box
PfamPF003192.3E-15238283IPR002100Transcription factor, MADS-box
CDDcd001205.67E-11243288No hitNo description
PRINTSPR004044.6E-11251266IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-11266287IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMGFIQEVVF EEPSVGNAVM RERSEDARGL SVIRAEEYDI DAKSESSVGV SMKEVEIIEI  60
TSTSYEFSPS GFFVGQKLRP ADNDTDTKSE PSVGDGGFAV DSQLAEDYEE FEGKSTSIEY  120
TPFGFYSESS VKMLGDDEAE SSPVYIVSED NDRNVSVPEE QSEGSEKQVC NLKRKAAAQA  180
DSRPVKRRIV SAARDFPDGC GVGNSGVVKE GEEEGTDDDH RSKKQRTSKG KQKIKIKKID  240
NKQSRNVTFS KRRQGLFKKC ADFSSLYGSQ YAAIAFSIAG KPFVSGYPST DERFAIDSRD  300
NVGVNWWDDP TDGLGLDELE RFKAKLEGNS GVVKKGEEEG TDDDNVGGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187RPVKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-11AGAMOUS-like 61