PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca38095.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 344aa MW: 39496.9 Da PI: 5.0799

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca38095.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	54.8	3.1e-17	9	149	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.........kvka..eekewyfFskrdkk.yatgkrknr.atksgyWkatg 87 +Gf F+Pt ++lv ++L +++g++l+ + + ++++y +P+++ + + +++ +yfF++ ++ ++++kr nr + ++g+W a+ Dca38095.1 9 VGFVFEPTIQQLVGYFLMTRLNGQQLPSFYPqFFDFNVYCDHPSNIFSsinnvrgvhD--EdeDDDGYYFFTQLTRRnNPKSKRFNRvVKDHGTWLAKS 105 7**********************88876669999******643566664322..1324448899998765515689966669*** PP NAM 88 kdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 + +v+++ g+l+g k f +++ ++ +W m ey+l Dca38095.1 106 EIIQVYDSVGNLIGFEKYYKFVpinMKKKDPLNEDEWQMYEYTL 149 *****************98764444555799*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-18	5	165	IPR003441	NAC domain
PROSITE profile	PS51005	23.665	7	165	IPR003441	NAC domain
Pfam	PF02365	1.8E-10	9	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MIMEVYRQVG FVFEPTIQQL VGYFLMTRLN GQQLPSFYPQ FFDFNVYCDH PSNIFSSINN 60 VRGVHDEDED DDGYYFFTQL TRRNNPKSKR FNRVVKDHGT WLAKSEIIQV YDSVGNLIGF 120 EKYYKFVPIN MKKKDPLNED EWQMYEYTLN DVKCQDFVLC HITRKLSPAI KQRRLFAKMS 180 RLISPIIVSQ NQNNSQENLS KTTCVEDSIN LDPFDLTFKS LLTECGGVNI NNNNDNNNNN 240 NNNLSNEGQI DIDFYLEQET MPEGDQGSIY EQSVSNNGNG VQGGFQAVFG GSYNEYNSNN 300 VGQLIPRDDY GHVHVHGGVQ GARDRFKSLE KQGLIVPTAN STRN

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MIMEVYRQVG FVFEPTIQQL VGYFLMTRLN GQQLPSFYPQ FFDFNVYCDH PSNIFSSINN  60
VRGVHDEDED DDGYYFFTQL TRRNNPKSKR FNRVVKDHGT WLAKSEIIQV YDSVGNLIGF  120
EKYYKFVPIN MKKKDPLNED EWQMYEYTLN DVKCQDFVLC HITRKLSPAI KQRRLFAKMS  180
RLISPIIVSQ NQNNSQENLS KTTCVEDSIN LDPFDLTFKS LLTECGGVNI NNNNDNNNNN  240
NNNLSNEGQI DIDFYLEQET MPEGDQGSIY EQSVSNNGNG VQGGFQAVFG GSYNEYNSNN  300
VGQLIPRDDY GHVHVHGGVQ GARDRFKSLE KQGLIVPTAN STRN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71930.1	1e-07	vascular related NAC-domain protein 7