PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca38298.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 102aa    MW: 11072.4 Da    PI: 4.5496
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca38298.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-111445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WT+eEd++lv+ ++++G g+W++ ++  g
       Dca38298.1 14 KGPWTPEEDQILVNFIQKHGHGSWRALPKLAG 45
                     79*************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.445959IPR017877Myb-like domain
SuperFamilySSF466891.66E-91143IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-131245IPR009057Homeodomain-like
PfamPF002491.8E-91445IPR001005SANT/Myb domain
CDDcd001671.31E-61649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MGRSPTRDEI GLKKGPWTPE EDQILVNFIQ KHGHGSWRAL PKLAGEEDCS PTSPWLPSLS  60
SSPSPPPTTT AATTATTMTA AMSSSFWPDL LLEDDPLFHE IA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2H3XDS52e-20A0A2H3XDS5_PHODC; transcription factor MYB93-like
TrEMBLA0A444EIF52e-20A0A444EIF5_ENSVE; Uncharacterized protein
TrEMBLQ84PP53e-20Q84PP5_LOTJA; Transcription factor MYB101
STRINGXP_008782327.14e-21(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.17e-22myb domain protein 92