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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Dca38314.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 74aa MW: 8305.15 Da PI: 5.1103 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 18.3 | 4.3e-06 | 1 | 38 | 16 | 55 |
HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+ + ++ Lr+llP+ + s + Le+A++YIk+L+
Dca38314.1 1 MSDLLSSLRSLLPQeY---LREQSSTCDDLEEATNYIKNLE 38
56889*********55...7777***************996 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 9.686 | 1 | 37 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 4.71E-8 | 1 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 9.8E-8 | 2 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 74 aa Download sequence Send to blast |
MSDLLSSLRS LLPQEYLREQ SSTCDDLEEA TNYIKNLETS IKELEDKRDK LKKSSSLSLS 60 SSSSSSSKKS DNKN |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010693647.1 | 2e-13 | PREDICTED: transcription factor bHLH120 | ||||
| TrEMBL | A0A0J8E6W0 | 3e-12 | A0A0J8E6W0_BETVU; Uncharacterized protein | ||||
| STRING | XP_010693647.1 | 6e-13 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G12540.1 | 1e-06 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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