PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca38324.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 314aa    MW: 35613.1 Da    PI: 6.3702
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca38324.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.8e-12102146347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + +  G+g+Wk I+++   ++t  q+ s+ qky
       Dca38324.1 102 PWTEEEHRSFLLGLQNCGKGDWKNISKHYVPTKTTSQVASHAQKY 146
                      8****************************99*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00941466IPR001005SANT/Myb domain
SuperFamilySSF466892.15E-61670IPR009057Homeodomain-like
CDDcd001670.004611764No hitNo description
PROSITE profilePS500905.0061864IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-1095149IPR009057Homeodomain-like
PROSITE profilePS5129414.79995151IPR017930Myb domain
SuperFamilySSF466895.02E-1697151IPR009057Homeodomain-like
SMARTSM007172.7E-999149IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.7E-1599149IPR006447Myb domain, plants
PfamPF002492.2E-10102146IPR001005SANT/Myb domain
CDDcd001677.16E-9102147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNSTQNSMLI GGVQNKEWTY EENRLFEKAL AEMNIDSPTF FDNVMAILPS KTIDEIKSRY  60
EQLINDFLVI EVSNFSASSP AYHNNSNNTN VGVAENKRKA VPWTEEEHRS FLLGLQNCGK  120
GDWKNISKHY VPTKTTSQVA SHAQKYFRRI KCKTPLEKRR HSIHDIRIVN NSTIAYTAAR  180
NPNYYVNYPT NQLINHPQHA INPPNHNLNH STHNNELLNQ EPLTNDYYNN NRDYGFHNSG  240
YQFGAETEQY TVPTIGTFSS GVTSNASLEN ATSNVGSNNN NVEIVSCGDN NVLSNSNDLY  300
DYEQFLSTPC DGFP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680852.11e-59PREDICTED: transcription factor DIVARICATA-like
STRINGXP_010680852.15e-59(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-40MYB family protein