PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca38459.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family SRS
Protein Properties Length: 230aa    MW: 24972.4 Da    PI: 8.1988
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca38459.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702167.19.8e-52141543153
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101
                 s t+sCqdCGn+ak+dC+h+RCRtCCk+rg+ C thvkstWvp+a+rr+rq++++ +++++     +  ++ + +  s+ +  l++ +++s+    + +
  Dca38459.1  14 SETISCQDCGNKAKRDCEHRRCRTCCKTRGLPCPTHVKSTWVPVARRRQRQHHHHHQHHHH-----NLFNNLPLS-LSTPTPFLHCLTTTSS----SGQ 102
                 6789**********************************************88776643322.....223333333.2344444444443333....334 PP

      DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                   ++P+ev+s a f+c+rvss d+  e++aYqt+++igGhvfkGiLydqG+ 
  Dca38459.1 103 EGNFPAEVNSLATFKCIRVSSDDNVVEQYAYQTSINIGGHVFKGILYDQGTT 154
                 667***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.6E-5116153IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.3E-241860IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-23106152IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTGNNDNNNN SASSETISCQ DCGNKAKRDC EHRRCRTCCK TRGLPCPTHV KSTWVPVARR  60
RQRQHHHHHQ HHHHNLFNNL PLSLSTPTPF LHCLTTTSSS GQEGNFPAEV NSLATFKCIR  120
VSSDDNVVEQ YAYQTSINIG GHVFKGILYD QGTTTTAATT SGGGGDQSSS AGTSDYPHHH  180
QFSITAATTA AAHTGDGGGG ANVLYPPHPL YSTPFNAFLP GMQFFPHPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849934.13e-73protein SHI RELATED SEQUENCE 1
TrEMBLA0A0K9RW437e-72A0A0K9RW43_SPIOL; Uncharacterized protein
STRINGXP_010690810.12e-66(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-41Lateral root primordium (LRP) protein-related