PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca38493.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 763aa MW: 87962.9 Da PI: 7.7146

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca38493.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.7	6.5e-07	43	135	6	89
FAR1 6 YAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgk...wevtkle..leHnHel 89 A GF ++k+++ ++ +r+ e + f+Cs++g++++ + ++ +++ ++++++C+ +++ +++ +++ w++t + HnH+l Dca38493.1 43 IALANGFALVKANNGSKnRRQPELLASYFRCSRYGRSKSVFDP-DNPKKKPKTQKCDCQFRIRAVQNYhcvdNERiilWNITIAKkfGFHNHDL 135 57889*99988765549999************9998877.67777778888888888876555445422212336665555445688888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10551	1.5E-24	251	346	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MSDAELVDSF ENLGGDGVDY NPLFVTSDCF ADSKLAHKWA NEIALANGFA LVKANNGSKN 60 RRQPELLASY FRCSRYGRSK SVFDPDNPKK KPKTQKCDCQ FRIRAVQNYH CVDNERIILW 120 NITIAKKFGF HNHDLIKYKD GHRHYAGLDE DEKAFVKQEY SSSIAPRDIK SGLHHRTPDK 180 PPPSSRQIYN HTSMLRKELM GERNPAQQML ALAVNANYVH WHETNHMTHE LTHVFMSHPE 240 AIKLFRAYPH VILMDSTYKT NIYKMTLVEV VGVTPVGSSF LIACVLIPTE SEEGYTWLLR 300 RLMDILECTG TSPSAFVTDR ELGLVGAHRK LYPDTPHLFC RWHVNRAIEN RALLIHKTEW 360 YKNHVLRNSE TGWYNVINAQ SEEAFKDAWV AFNSKWTKLS SYVSNTWGEH ASKFVLCYTN 420 DYFHLGNTAT SRVESAHSLL KAWLKSAHLT LDTMWSRIHS MIEAQQCKIR KELEDSRSRP 480 RITHRLFSLL HGKVSIKAIE IMESEIRRGE ALGVGLEDRC GCTLITTHGL PCSCRLIGLK 540 NKGRRVHLGD VNAFWRTLEF DSDEVMPKND IDLFDELVEK ARKSDPAHQK IFIETLRNCL 600 HPEDEDIRPP AIRENPKGEV GAPLEKDYTI GIFSSWTKRY GVPECLWSFF DGWKDVGNDG 660 HCGYRVISHA QRGQEEDYVV MREWEITEIT THDVYKDFFG VTYKMPNGYT TYENTLRRIG 720 FFSKSPCGDD HWLCSDDFFV FASMFNWTIC VIGQYKDRKG DKA

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MSDAELVDSF ENLGGDGVDY NPLFVTSDCF ADSKLAHKWA NEIALANGFA LVKANNGSKN  60
RRQPELLASY FRCSRYGRSK SVFDPDNPKK KPKTQKCDCQ FRIRAVQNYH CVDNERIILW  120
NITIAKKFGF HNHDLIKYKD GHRHYAGLDE DEKAFVKQEY SSSIAPRDIK SGLHHRTPDK  180
PPPSSRQIYN HTSMLRKELM GERNPAQQML ALAVNANYVH WHETNHMTHE LTHVFMSHPE  240
AIKLFRAYPH VILMDSTYKT NIYKMTLVEV VGVTPVGSSF LIACVLIPTE SEEGYTWLLR  300
RLMDILECTG TSPSAFVTDR ELGLVGAHRK LYPDTPHLFC RWHVNRAIEN RALLIHKTEW  360
YKNHVLRNSE TGWYNVINAQ SEEAFKDAWV AFNSKWTKLS SYVSNTWGEH ASKFVLCYTN  420
DYFHLGNTAT SRVESAHSLL KAWLKSAHLT LDTMWSRIHS MIEAQQCKIR KELEDSRSRP  480
RITHRLFSLL HGKVSIKAIE IMESEIRRGE ALGVGLEDRC GCTLITTHGL PCSCRLIGLK  540
NKGRRVHLGD VNAFWRTLEF DSDEVMPKND IDLFDELVEK ARKSDPAHQK IFIETLRNCL  600
HPEDEDIRPP AIRENPKGEV GAPLEKDYTI GIFSSWTKRY GVPECLWSFF DGWKDVGNDG  660
HCGYRVISHA QRGQEEDYVV MREWEITEIT THDVYKDFFG VTYKMPNGYT TYENTLRRIG  720
FFSKSPCGDD HWLCSDDFFV FASMFNWTIC VIGQYKDRKG DKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	93	PKKKPKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-15	FAR1 family protein