PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca38557.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

M-type_MADS

Protein Properties

Length: 228aa MW: 26023.3 Da PI: 10.4063

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca38557.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.5	6.2e-17	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+n + r vt+ kR +gilKK +ELSvLC+++++ ++++s Dca38557.1 11 IKNATARRVTYKKRVQGILKKTQELSVLCGVDACAVVYGSY 51 99************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.072	1	50	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-20	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-20	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.99E-25	2	83	No hit	No description
PRINTS	PR00404	1.3E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-15	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MTRKKVKLLY IKNATARRVT YKKRVQGILK KTQELSVLCG VDACAVVYGS YDQAPVVWPS 60 SEIEATRILM EFRRKPDIDQ TQRKLTQETF LRQSVTKSEE RLAKLQRRNR EMDMENVMSD 120 LLRGKPIQQV PFGDLGDLIW VIDDKLRTIQ HRMRGMKGPD NKAPDAANLT VNPNSNLNLN 180 TPLGNETTMG GLNAMMGGVN AMGKWWICLA FNFFVAVYQF MVYSSRSV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675118.1	8e-81	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A438HYN9	2e-47	A0A438HYN9_VITVI; Agamous-like MADS-box protein AGL80
STRING	XP_010675118.1	3e-80	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26630.1	8e-33	M-type_MADS family protein